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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10001452m |
| Common Name | EUTSA_v10001452mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
MYB_related |
| Protein Properties |
Length: 440aa MW: 49879.8 Da PI: 9.6715 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10001452m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 27.8 | 5.9e-09 | 132 | 174 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
WT+eE ++l ++++++ + ++ Ia ++++ Rt +++k+r+++
Thhalv10001452m 132 VWTKEETDQLFELCERFDLR-FTVIADRFPLLRTVEELKDRYYS 174
6*******************.*********99**********97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0000812 | Cellular Component | Swr1 complex |
| GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 440 aa
Download sequence Send
to blast |
MGGTDAKDIL GLPKTPLSLT QEKKSRPQKE SHRKPDGISR EVYALTGGVA PLMPSIDVTH 60
LKRRPPPDEK VVWQWLPFTN SARKDDLQLY HWVRVVNDVP PTGDYSFAKY NKSVDILKYT 120
DEEYENHLTD PVWTKEETDQ LFELCERFDL RFTVIADRFP LLRTVEELKD RYYSVTRALL 180
RARAQSPADV ANHPLMKDPY DITRDRERKR ALSMVLSQSR HQEKKDAEIL AEAKRITEMR 240
LAARRAEEPD MSANENIDGV VPGRSVSPSS NSQLPATAVA PSTLTMADYA STLASLRMLH 300
VYLRTYGLEQ MVQAASSAVG LRTIKRVEQT LQDLGVNLKP KVPTKTVCDE HLELRKEILT 360
LLNLQKQLQY KESEGSSHRE GPYAAAPDTP KDRVFTTDPF NFGAERPIKK EQKRKGPGRQ 420
SDTPSPAHKR PRKMKASDL*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3hm5_A | 3e-19 | 104 | 184 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
| 4iej_A | 3e-19 | 104 | 184 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353019 | 0.0 | AK353019.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-J15. |
