PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001374m
Common NameEUTSA_v10001374mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 577aa    MW: 64103.9 Da    PI: 6.3118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001374mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75.1e-14403449455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YIk+Lq
  Thhalv10001374m 403 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAISYIKELQ 449
                      799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502318.73424119IPR000772Ricin B, lectin domain
PfamPF142152.7E-5148239IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.01E-19398463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.936399448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-15402453No hitNo description
PfamPF000101.9E-11403449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-19403464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-18405454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MNMSGMGWGD EEESVVSAVL GNLASDFLRA NSNSNQNLFL VMGTDDTLNK KLSSLVDCPN  60
SENFSWNYAI FWQQTMSRSG HQVLGWGDGC CREPNEEEES KVVRVYNCNS LGLEEERWED  120
MRKRVLQKLH RLFGGSDEDN YALSLEKVTA TEIFFLASMY FFFNHGEGGP GRCYASGKHV  180
WLSDAVNSDS DYCFRSFMAK SAGIRTIVMV PTDAGVLELG SVWSLPENVD LVRSVQALFM  240
RRVKPPLMVN STNTNMSGGG IHKLFGKELN NSEQGSHHAF PRKLDVIRNV DERFTPQIWQ  300
GYNNKGSTFG YTPQRVDVKV QENVNVVVDD NNYKMQIQFA GSSVAASSNP STNTHLEKSG  360
SCTEKRPASL LLAGGAGTAS VADDKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY  420
ALRSVVPNIS KMDKASLLGD AISYIKELQE KVKIMEAERV RTESSLSESD QMTTRTVESP  480
EVDIQAAKEE VVVRVTSPLD SHPASRIIQA MRNSEVSLME SKLSLADDTM FHTFVIKSNN  540
GSDPLTKEKL IAAVYPQTSS MQQPLPSSSS QVSGDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29397468273Transcription factor MYC2
5gnj_B3e-29397468273Transcription factor MYC2
5gnj_E3e-29397468273Transcription factor MYC2
5gnj_F3e-29397468273Transcription factor MYC2
5gnj_G3e-29397468273Transcription factor MYC2
5gnj_I3e-29397468273Transcription factor MYC2
5gnj_M3e-29397468273Transcription factor MYC2
5gnj_N3e-29397468273Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384392KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001374m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397843.10.0transcription factor ABA-INDUCIBLE bHLH-TYPE
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLV4N2990.0V4N299_EUTSA; Uncharacterized protein
STRINGXP_006397843.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]