PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001317m
Common NameEUTSA_v10001317mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 787aa    MW: 86456.7 Da    PI: 6.6269
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001317mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34e-21105160156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p++++r +L+++l+L+ rqVk+WFqNrR+++k
  Thhalv10001317m 105 KKRYHRHTPQQIHELESVFKECPHPDEKQRLDLSHRLNLDSRQVKFWFQNRRTQMK 160
                      688999***********************************************999 PP
2START179.81.6e-563065341206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                      ela++a++elv +a+ +ep+W  ss    es+n++e+ +kf++  v      + +ea++++g+v+ ++  lve+l+d+  +W e+++    + +
  Thhalv10001317m 306 ELALSAMEELVEMAQTSEPLWIPSSkgkrESLNREEYDKKFSSCSVgpkpdgFVSEASKEVGMVIINSLALVETLMDSE-RWAEMFPcmiaRNS 398
                      57899************************************99888*********************************.************** PP

                      EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEE CS
            START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskv 164
                      t+e is+g      gal+lm+aelq+lsplvp R + f+R+++q+ +g+w++vdvS+d  +++       s+  +++lpSg+l+++++ng+sk+
  Thhalv10001317m 399 TTEIISNGmggtrnGALHLMQAELQLLSPLVPvRQVNFLRFCKQHAEGVWAVVDVSDDKISDRGGsasGRSSLSCRRLPSGCLVQDMPNGYSKI 492
                      **********************************************************9999876556677888******************** PP

                      EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      tw++h ++++  +h l+r+lv+sgla+g k+w +tlqrqce+
  Thhalv10001317m 493 TWIDHSEYDETKIHHLYRPLVSSGLAFGSKRWISTLQRQCES 534
                      ****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-2092162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-2195162IPR009057Homeodomain-like
PROSITE profilePS5007117.362102162IPR001356Homeobox domain
SMARTSM003891.1E-19103166IPR001356Homeobox domain
PfamPF000461.0E-18105160IPR001356Homeobox domain
CDDcd000861.69E-18105162No hitNo description
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084840.384297537IPR002913START domain
SuperFamilySSF559611.26E-27300534No hitNo description
CDDcd088752.74E-113301533No hitNo description
PfamPF018522.0E-48306534IPR002913START domain
SMARTSM002345.8E-42306534IPR002913START domain
SuperFamilySSF559614.81E-19564778No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MNFGGFLHHD DDKSSGGETV GGGNHFSSAA DGLVKSVFSS PRLSLGLQTN GENNGGGGEV  60
GRIGESLEVS VSRTSPESRS GSDNAEALSG DDDVDASDHR PFKKKKRYHR HTPQQIHELE  120
SVFKECPHPD EKQRLDLSHR LNLDSRQVKF WFQNRRTQMK TQIERHENAL LRQENDKLRA  180
ENMSVREAMR NPMCGHCGGS AVLAEISLEE HHLRIENSRL KDELDRICAL AGKFINRSDD  240
QLPNSALRLV VGSKNGYGGG DGFTLVPPPG FEMSSSSPFF SGLAAPVNRS GTDVATRLQQ  300
KSLYMELALS AMEELVEMAQ TSEPLWIPSS KGKRESLNRE EYDKKFSSCS VGPKPDGFVS  360
EASKEVGMVI INSLALVETL MDSERWAEMF PCMIARNSTT EIISNGMGGT RNGALHLMQA  420
ELQLLSPLVP VRQVNFLRFC KQHAEGVWAV VDVSDDKISD RGGSASGRSS LSCRRLPSGC  480
LVQDMPNGYS KITWIDHSEY DETKIHHLYR PLVSSGLAFG SKRWISTLQR QCESLTILMS  540
STIPNRNIKP TPISSTGKKS MLKLAQRMTE NFCRGVCASS SQKWSRLEVG NIDEDVRIMT  600
RKNEDDSGEP PGILLSAATS VWVPVSPRRL FDFLRDELLR SDWDILSNGG PMQEIANIFK  660
GQDHSNSVSL LRSTAMNANQ SCMLILQETS IDASGAFVVY APVDIPAMHS VMNGADSAYV  720
ALLPSGFAIL PNGQGMPENE SLLTVAFQIL VNSLPTAKLN VESIETVNNL ISCTVHKIRA  780
ALRCDK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001317m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397757.10.0homeobox-leucine zipper protein HDG1 isoform X2
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLV4KMS60.0V4KMS6_EUTSA; Uncharacterized protein
STRINGXP_006397757.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]