PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 325aa MW: 35985.7 Da PI: 6.6493

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10000961m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.3	8.9e-16	85	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++K + a+i+ A+++Ik+L+ Thhalv10000961m 85 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FAQKGDQASIVGGAIDFIKELE 136 79**************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.31E-14	83	139	No hit	No description
SuperFamily	SSF47459	2.22E-16	83	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.031	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-13	85	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-13	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-11	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPSPENDII ISKNTIPAIS HQEPSSRQPP 60 PASRGKKRRR RKPRVCKNEE EAENQRMTHI AVERNRRRQM NQHLSVLRSL MPQPFAQKGD 120 QASIVGGAID FIKELEHQLL SLEAQKLQKA KLNQTVTSST SQDTNGDPEI PHQPSSLSQF 180 FLYSYDPSQE NMNGSTSSVK TAMEDLEVTL IETHANIRIL SRRNGFRWTA VTTAGPPQLS 240 KLVAALQSLS LSVLHLSVTT LETFAIYSIS TKVEESCQLS SVDDIAGAVH HMLSIIEEEH 300 LCCSSISELP FDFPLNHTNA THSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	71	KKRRRRK
2	65	72	KKRRRRKP
3	66	71	KRRRRK
4	67	73	RRRRKPR
5	85	96	RMTHIAVERNRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10000961m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353555	0.0	AK353555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-J01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006398364.1	0.0	transcription factor bHLH71
Swissprot	Q56XR0	1e-177	BH071_ARATH; Transcription factor bHLH71
TrEMBL	V4LBP7	0.0	V4LBP7_EUTSA; Uncharacterized protein
STRING	XP_006398364.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10389	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	1e-155	beta HLH protein 71

Link Out ? help Back to Top
Phytozome	Thhalv10000961m
Entrez Gene	18016141

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]