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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10000932m | ||||||||
Common Name | EUTSA_v10000932mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB_related | ||||||||
Protein Properties | Length: 368aa MW: 39696.8 Da PI: 6.4485 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.5 | 3e-13 | 98 | 142 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r ++Rt+ q+ s+ qky Thhalv10000932m 98 PWTEEEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKY 142 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.515 | 3 | 20 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 19.44 | 91 | 147 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-17 | 93 | 148 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-18 | 94 | 146 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.3E-11 | 95 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-11 | 95 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-11 | 98 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.73E-9 | 98 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0030307 | Biological Process | positive regulation of cell growth | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:2000469 | Biological Process | negative regulation of peroxidase activity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MTRRCSHCNH NGHNSRTCPN RGVKLFGVRL TEGSIRKSAS MGNLSHYTGS GSGGHGGNGS 60 NTPGSPGDNP DHVAGDGYAS EDFVAGSSSS RERKKGTPWT EEEHRMFLLG LQKLGKGDWR 120 GISRNYVTTR TPTQVASHAQ KYFIRQSNVS RRKRRSSLFD MVPDEAGDIP MDLQEPEVEN 180 IPGETEMQSA DSVHQTLAPN SLQAPSILEI EECESMDSTN STIGEPTATA TAAAASSSSS 240 ILEETRQLQS QPQPQLPGSF PILYPAYFSP YYPFPFPIWP AGYVPEPTKK EETHEILRPT 300 AVHSKAPINV DELLGMSKLS LGETNKNGES DQSLSLKLGG GSSTRQSAFH PNPSSDSSDI 360 NSVIHAL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00551 | DAP | Transfer from AT5G47390 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10000932m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352928 | 0.0 | AK352928.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-B07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398430.1 | 0.0 | transcription factor KUA1 | ||||
Swissprot | Q9LVS0 | 0.0 | KUA1_ARATH; Transcription factor KUA1 | ||||
TrEMBL | V4LJ95 | 0.0 | V4LJ95_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398430.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3426 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-179 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10000932m |
Entrez Gene | 18016252 |
Publications ? help Back to Top | |||
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