PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10000853m

Common Name

EUTSA_v10000853mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 535aa MW: 59144.1 Da PI: 5.9109

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10000853m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	364	410	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er RRd++N++f Lr ++P+ K++Ka+ L Av YI++L Thhalv10000853m 364 MNHVEAERLRRDKLNQRFYALRAVVPNV-----SKMDKASLLGDAVCYINEL 410 589**********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.1E-48	41	225	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.52	361	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-16	364	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.65E-12	364	411	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-15	365	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	365	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-14	367	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005509	Molecular Function	calcium ion binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MNHFNTDHNL SIIEDLLTSS SFSDLWPPLP PANLNLDDNT LQKRLQAVLN GTHEAWTYVI 60 FWKPSYYEFS GESVLIWGDG IHKDDDVKSR RRKKTMAEKE HRSKVLRELN SMISGEAFPV 120 VGGDDDDDDG DVEVTDTEWY FLVSMTCSFC IGSGLAGKAF ATYNPVWVTG SDDINGSGCD 180 RAKQGGGLGL ETIVCIPLDN GVLELGSTVE IRQHSDLLNK IRFLFNFKGS DDFPGAPNSK 240 SKLFSTQVAK VSLRTVTDNP NPTYPKIQKS FSPELNFSMV TPNSSTGALS GEILNFGDDV 300 KRNPGILNCT SYPGQIQNDD GDLLAAVKKI DDSDQSNINA TVVCENKRQS KRGRKPANGR 360 KEPMNHVEAE RLRRDKLNQR FYALRAVVPN VSKMDKASLL GDAVCYINEL KSRAENAEME 420 KIAIEIQLQK LKEEISGCNA ISSVCADGKN ASKIGTAKID VKVMGCDAMI RVESSKRNHP 480 GARLMNAFMD LELEVNHASV SVINDLMVQQ ATVKMVLKFY TEEQLRVMLI SKII*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MNHFNTDHNL SIIEDLLTSS SFSDLWPPLP PANLNLDDNT LQKRLQAVLN GTHEAWTYVI  60
FWKPSYYEFS GESVLIWGDG IHKDDDVKSR RRKKTMAEKE HRSKVLRELN SMISGEAFPV  120
VGGDDDDDDG DVEVTDTEWY FLVSMTCSFC IGSGLAGKAF ATYNPVWVTG SDDINGSGCD  180
RAKQGGGLGL ETIVCIPLDN GVLELGSTVE IRQHSDLLNK IRFLFNFKGS DDFPGAPNSK  240
SKLFSTQVAK VSLRTVTDNP NPTYPKIQKS FSPELNFSMV TPNSSTGALS GEILNFGDDV  300
KRNPGILNCT SYPGQIQNDD GDLLAAVKKI DDSDQSNINA TVVCENKRQS KRGRKPANGR  360
KEPMNHVEAE RLRRDKLNQR FYALRAVVPN VSKMDKASLL GDAVCYINEL KSRAENAEME  420
KIAIEIQLQK LKEEISGCNA ISSVCADGKN ASKIGTAKID VKVMGCDAMI RVESSKRNHP  480
GARLMNAFMD LELEVNHASV SVINDLMVQQ ATVKMVLKFY TEEQLRVMLI SKII*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	4e-50	36	227	4	194	Transcription factor MYC3
4rqw_B	4e-50	36	227	4	194	Transcription factor MYC3
4rs9_A	4e-50	36	227	4	194	Transcription factor MYC3
4yz6_A	4e-50	36	227	4	194	Transcription factor MYC3
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00547	DAP	Transfer from AT5G46830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10000853m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006398377.1	0.0	transcription factor bHLH28
Swissprot	Q9LUK7	0.0	BH028_ARATH; Transcription factor bHLH28
TrEMBL	V4KPJ8	0.0	V4KPJ8_EUTSA; Uncharacterized protein
STRING	XP_006398377.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13953	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	0.0	NACL-inducible gene 1

Link Out ? help Back to Top
Phytozome	Thhalv10000853m
Entrez Gene	18016238

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]