PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000694m
Common NameEUTSA_v10000694mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 122aa    MW: 13593.5 Da    PI: 4.3135
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000694mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.32.4e-28594188
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqle 88
                     +C+aCkvl+  C+ +Cv+apyfp+++p+kf  vh++FGa+nv k+l++   ++ + e a+++l yeAear++d v G+v+ i + ++++ 
  Thhalv10000694m  5 PCSACKVLKSVCTGECVFAPYFPSTEPEKFDRVHRIFGAENVYKILSNEtfSPLQLEYAVKALSYEAEARIQDLVTGCVEQIVSAKNEIV 94
                     7*********************************************8764588889****************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.414108IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-28595IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MASNPCSACK VLKSVCTGEC VFAPYFPSTE PEKFDRVHRI FGAENVYKIL SNETFSPLQL  60
EYAVKALSYE AEARIQDLVT GCVEQIVSAK NEIVATMGSD KVPEYNDIPM PDDFLTTQNQ  120
QM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-26293897LOB family transfactor Ramosa2.1
5ly0_B6e-26293897LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000694m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405168.21e-87LOB domain-containing protein 35
SwissprotQ9FFL31e-38LBD35_ARATH; LOB domain-containing protein 35
TrEMBLV4NJV55e-86V4NJV5_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405168.19e-87(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.15e-41LOB domain-containing protein 35