PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000579m
Common NameEUTSA_v10000579mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 379aa    MW: 42692.7 Da    PI: 9.8028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000579mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.72e-2226120298
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      f +l+++++l+ + l+lpk+f++++g+  ++ ++++l+d   rsW++ l+++k+s+++++t+GW+ F+++ng k+g f++Fkl++ ++++++++
  Thhalv10000579m  26 FVALVTASNLQDDALYLPKEFTSSNGLTRRC-RKIVLTDGGERSWTLDLRFNKSSDTFYITRGWRIFCDENGKKAGSFFMFKLMK-NGETPLLS 117
                      567999*******************999655.7**************************************************99.66668888 PP

                      EE- CS
               B3  96 vfr 98 
                      ++ 
  Thhalv10000579m 118 FCP 120
                      876 PP
2B332.41.6e-101982551575
                      -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
               B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                       l lp +f++++g++k++  ++tl  ++g +W  +l+ r + g++ l+kGWk+F+kan+ k
  Thhalv10000579m 198 FLNLPLQFIRDNGLDKPG--MVTLLGKDGTRWLANLR-RETTGTMNLGKGWKDFAKANNNK 255
                      589************766..8***************3.55555689************865 PP
3B338.52.1e-122963741798
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                       lp +f++++g++k +  ++tl  ++g + + +l    k+g + l+  Wk+F++ang+k g++++++++++  ++++v+k+++
  Thhalv10000579m 296 HLPSQFMRDNGIDKLG--KITLLGKEGMTCSAYL--LSKDGFVALGIDWKGFCEANGVKIGESFTLEFISEqYKTTYVLKFCS 374
                      59*********99766..8***************..99*******************************98899999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2219120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2221121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.94525121IPR003340B3 DNA binding domain
CDDcd100171.81E-2025120No hitNo description
PfamPF023621.4E-2026120IPR003340B3 DNA binding domain
SMARTSM010194.5E-3026122IPR003340B3 DNA binding domain
SMARTSM010199.1E-7189275IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-11191257IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-10195253No hitNo description
SuperFamilySSF1019363.14E-11197253IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.769199278IPR003340B3 DNA binding domain
PfamPF023622.3E-8199256IPR003340B3 DNA binding domain
SMARTSM010191.5E-10288376IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-12294376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-13295375IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-11296374IPR003340B3 DNA binding domain
CDDcd100178.23E-8297360No hitNo description
PROSITE profilePS508638.219297375IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
LPRKKKVKMN SSETEADSPS SDHSCFVALV TASNLQDDAL YLPKEFTSSN GLTRRCRKIV  60
LTDGGERSWT LDLRFNKSSD TFYITRGWRI FCDENGKKAG SFFMFKLMKN GETPLLSFCP  120
AESRGEKASN KESLTIQPSS GKQISKEERK KNHLRCRDST SPIENRYVTL TATHDSLKKG  180
RLFDHLHSYW LYSPFESFLN LPLQFIRDNG LDKPGMVTLL GKDGTRWLAN LRRETTGTMN  240
LGKGWKDFAK ANNNKERVVQ KLARKSLFLQ NLSVETRPGQ EHYSGEKCKG AVAKQHLPSQ  300
FMRDNGIDKL GKITLLGKEG MTCSAYLLSK DGFVALGIDW KGFCEANGVK IGESFTLEFI  360
SEQYKTTYVL KFCSNCGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000579m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180044.21e-116transcriptional factor B3 family protein
SwissprotP0CAP41e-117REM12_ARATH; B3 domain-containing protein REM12
TrEMBLV4M2J60.0V4M2J6_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405010.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-120B3 family protein