PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000537m
Common NameEUTSA_v10000537mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 117aa    MW: 13449.3 Da    PI: 4.6797
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000537mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260766.7e-2438818101
           DUF260  18 lapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                      +apyfp+++p++f  vh+ FGa+nv k+l++   ++ +re a+++l yeAear++dPv G+vg+ l++++ l++lk++++++k+e+
  Thhalv10000537m   3 FAPYFPSTEPENFDRVHRNFGAENVYKILSNEtfSPLQREYAVKALSYEAEARIQDPVTGCVGMSLAYKKILNNLKEQIVSTKNEI 88 
                      9****************************876569999******************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.314188IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-22385IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MRFAPYFPST EPENFDRVHR NFGAENVYKI LSNETFSPLQ REYAVKALSY EAEARIQDPV  60
TGCVGMSLAY KKILNNLKEQ IVSTKNEIMA TMGSDKVPEY NDIPMPDDFL MTQNQQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2138928112LOB family transfactor Ramosa2.1
5ly0_B2e-2138928112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000537m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405179.25e-84LOB domain-containing protein 35
SwissprotQ9FFL32e-37LBD35_ARATH; LOB domain-containing protein 35
TrEMBLV4LVV41e-82V4LVV4_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405179.12e-83(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.17e-40LOB domain-containing protein 35