PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10000309m | ||||||||
Common Name | EUTSA_v10000309mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bZIP | ||||||||
Protein Properties | Length: 238aa MW: 27165.4 Da PI: 8.9622 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39 | 1.8e-12 | 147 | 192 | 3 | 48 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 ++++ +r+++NRe+A+rsR RK+ ie+L+++v L eN++Lk++ Thhalv10000309m 147 DDRKRKRMESNRESAKRSRMRKQRHIENLKDEVNRLGLENRELKNR 192 67899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.1E-11 | 142 | 192 | No hit | No description |
SMART | SM00338 | 9.0E-16 | 145 | 209 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.645 | 147 | 210 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.1E-9 | 148 | 192 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.09E-10 | 149 | 200 | No hit | No description |
CDD | cd14702 | 7.46E-16 | 150 | 194 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 152 | 167 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MMSTVPAFSF AEPGFINQLS DFQTGFTPWD FDCSDLFSVI KSSLEPVILS PCSGESETGS 60 VRTNTGFHDI KPGSDESCIG SVKTNSGSVK TNSGSIKTNS GSDDSECFDG VPSPQSEELN 120 PENTIIRIKA TDHNRKKLNR PVSQTTDDRK RKRMESNRES AKRSRMRKQR HIENLKDEVN 180 RLGLENRELK NRFRIFLYHI EQISTYNNRL LSEQEILRRR FSEMRQILIL RQLQNQQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 152 | RKKLNRPVSQTTDDRKRKR |
2 | 161 | 166 | KRSRMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10000309m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404751.1 | 1e-175 | regulatory protein opaque-2 | ||||
TrEMBL | V4LQX5 | 1e-174 | V4LQX5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404751.1 | 1e-174 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7855 | 18 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22850.2 | 1e-107 | basic leucine-zipper 6 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10000309m |
Entrez Gene | 18021801 |