PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

WRKY

Protein Properties

Length: 298aa MW: 32148.4 Da PI: 10.2077

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10000270m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.1	1.3e-31	221	278	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+a+d +++++tYeg+Hnh+ Thhalv10000270m 221 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAADDSSMLIVTYEGDHNHS 278 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	7.8E-16	170	217	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.4E-33	208	278	IPR003657	WRKY domain
PROSITE profile	PS50811	30.607	214	280	IPR003657	WRKY domain
SuperFamily	SSF118290	7.85E-27	217	279	IPR003657	WRKY domain
SMART	SM00774	1.7E-37	219	279	IPR003657	WRKY domain
Pfam	PF03106	3.5E-27	221	277	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MAVELMTRNY ISGVGADSFA VQEAAASGLK SMENFIGLMS RESCNNSDQP SSSSAAVAAD 60 LESARNTTAD VAVSKFKRVI SLLDRTRTGH ARFRRAPVIS PIQEIKPTPF QAPPQIRKGS 120 FSSSIKTIDF SSLSSVTTES DHKKHLHRPS ETAPFETQSL STSSLSKSTK RKCNSENLIA 180 GKCVSASSSG RCHCSKKRKI KQKRVIRVPA ISAKMSDVPP DDYSWRKYGQ KPIKGSPHPR 240 GYYKCSSVRG CPARKHVERA ADDSSMLIVT YEGDHNHSLS AADLAGAAVA DLILESS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-22	207	279	2	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00275	DAP	Transfer from AT2G23320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10000270m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353321	0.0	AK353321.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-B06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006404816.1	0.0	probable WRKY transcription factor 15
Swissprot	O22176	1e-171	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	E4MXS4	0.0	E4MXS4_EUTHA; mRNA, clone: RTFL01-29-B06
TrEMBL	V4LR32	0.0	V4LR32_EUTSA; Uncharacterized protein
STRING	XP_006404816.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1715	28	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	1e-143	WRKY DNA-binding protein 15

Link Out ? help Back to Top
Phytozome	Thhalv10000270m
Entrez Gene	18021987

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]