PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000251m
Common NameEUTSA_v10000251mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 319aa    MW: 35258.2 Da    PI: 6.7946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000251mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11130176455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h  +Er+RR+++ +++  L  llP +     kK +Ka++Le A++++k+Lq
  Thhalv10000251m 130 EHVLAERKRRQKLSERLIALSALLPGL-----KKADKATVLEDAIKHLKHLQ 176
                      5889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-15126189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.958126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9130176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14130190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.76E-11131180No hitNo description
SMARTSM003533.5E-13132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007029Biological Processendoplasmic reticulum organization
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEDSNFMDLM IDTDEYLIDD WESDFLGETT DHLNTEPGSG SESGSGLKLV SERPTKQMKV  60
NSTSSSPSSS SSGSLTSPRV ISFGSPDPKM NVIETSLNFS NIANMDQKVG SKRKDCGNNG  120
GKREPHLLKE HVLAERKRRQ KLSERLIALS ALLPGLKKAD KATVLEDAIK HLKHLQERVK  180
KLEEERVGIK KMDQSVILVK RSQVYIDDDT SSYSSTCSAG SPPSSSLDEV SILKQTMPMI  240
EARVSDRDLL IRIHCDKNKG CLIKILGSLE KFRLEVVNSF TLQFGNSTLV ITILSKMDNN  300
FARPIEDVVK DIKLALAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139ERKRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000251m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404740.10.0transcription factor NAI1
SwissprotQ8S3F11e-160BH020_ARATH; Transcription factor NAI1
TrEMBLV4M1V50.0V4M1V5_EUTSA; Uncharacterized protein
STRINGXP_006404740.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-154bHLH family protein
Publications ? help Back to Top
  1. Hakenjos JP, et al.
    ML3 is a NEDD8- and ubiquitin-modified protein.
    Plant Physiol., 2013. 163(1): p. 135-49
    [PMID:23903439]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T
    The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition.
    Plant Signal Behav, 2015. 10(12): p. e1105418
    [PMID:26479492]