PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000220m
Common NameEUTSA_v10000220mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 352aa    MW: 36812.1 Da    PI: 6.7993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000220mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11156201555
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Thhalv10000220m 156 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 201
                      99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17149210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-13149205No hitNo description
PROSITE profilePS5088817.409151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-9156201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMNSSLLTPS SSSSSHIQTP ATTTFDHEDF LDQIFASAPW PSVVDEAHPP PPPIDGFVDS  60
RHQQIMMMPL SSHHQNDVVD GSSVQTLYNG FSAPAGSLPF HVPQGSGGGL MNQPGQTQTQ  120
TQPQGSASTG TGGTVAAPPQ SRTKVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN  180
GNKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAASVSS QISEAGGSHG NAFSAAAGDN  240
QTAGNSNDGI TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNLLN  300
SGAHADVGVP SSPNLSGMTV QSSNKVKLNG NGVREGSASI AVKESVSISK P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000220m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1763700.0AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBankBT0265120.0BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404930.10.0transcription factor bHLH66
SwissprotQ9ZUG90.0BH066_ARATH; Transcription factor bHLH66
TrEMBLV4M2C90.0V4M2C9_EUTSA; Uncharacterized protein
STRINGXP_006404930.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-160LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]