PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000137m
Common NameEUTSA_v10000137mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 506aa    MW: 56367.3 Da    PI: 5.6231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000137mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185e-06149168626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C+ff++   C++G++C+ +Hg
  Thhalv10000137m 149 CKFFMQ-QRCRFGSSCRSSHG 168
                      ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.427143170IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028143169IPR000571Zinc finger, CCCH-type
SMARTSM004439.3E-16305351IPR000467G-patch domain
PROSITE profilePS5017413.502307353IPR000467G-patch domain
PfamPF015851.5E-14307349IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MASEEDKALE NLLDIQLKDQ RESLSAIDEA LASDPSNPEL LSVHEELLSA IKDAEEGLLH  60
LKRARLLQEA DIVLHGLTHN VGIKAENVDP LANELEPEKT EEKKDSDGSK CRFRHTDGRW  120
YNGRIIGFEG SDSAKISFLT PTSESMMMCK FFMQQRCRFG SSCRSSHGLD VPLSSLKNYD  180
PTEWKQSMVG SKIWAVSGSK YDIWRVAELE SWDDELKVGG VVFKGDGSSA KLGSDAIALS  240
EYAQMTDDDG EEDEQYEEEG SDSGSEESGS SDCDEEFPEG IGFLESTNQR RGVQTDTAIF  300
AKWENHTRGI ASKMMASMGY REGMGLGASG QGIVDPILVK VLPPKRSLDH ALEHIKNGVE  360
KSEKPKKKRS RGGKRKREKK FAEAARAAKQ EEESKQDLFS LINNQLCTSH HEKVNGRESV  420
KKRQNKGPVD RKALVAYEEE VKELKLQAMK LEAMVKRNKN DQIVSDAATR RLNEVRKALA  480
CTMAAQASAS KDVESKEKEK KWLKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364379PKKKRSRGGKRKREKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000137m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405048.10.0zinc finger CCCH domain-containing protein 22
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLV4NJM80.0V4NJM8_EUTSA; Uncharacterized protein
STRINGXP_006405048.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein