PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000097m
Common NameEUTSA_v10000097mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 608aa    MW: 68532.5 Da    PI: 7.2082
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000097mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.9e-1419961093
                     HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                      ++++ l++p +f++++  g+ + e++t  l++ +s  +W+vk+  ++++    l++GW+eF+ an+ ++gD+vv +++g++ f  +
  Thhalv10000097m 19 GFNTH-LTIPLEFFSKYieGKTSVEKTTAELKSdSSDITWKVKM--TGRR----LSDGWEEFAVANNFRTGDVVVVRYEGDMVF--H 96
                     45555.9***********9666778889999985777*******..8888....9***********************998877..4 PP
2B362.37.9e-20179273298
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      f +++++++l+++ l+lp   +++  g++++ ++++l+d + rsW + l+++k+s+++++++GW++F+++ng ++  f++Fkl++ +++++v++
  Thhalv10000097m 179 FVAMVTPSSLRTDKLYLPQYVTNSS-GITRKCRKIVLTDGEERSWALDLRFSKSSDSFYISRGWRKFCEENGREAESFFMFKLVR-NGETPVLG 270
                      568999************8777555.5667889**************************************************98.67779999 PP

                      EE- CS
               B3  96 vfr 98 
                      ++ 
  Thhalv10000097m 271 FCP 273
                      986 PP
3B358.41.3e-18347440198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f++ ++p+d+ + +rl+lp++f++e+g++k++  ++ l  ++g++W  +l+ +k++ ++ ++ G k+FvkangLk  ++++++l++ +++++++
  Thhalv10000097m 347 FVTFTLPPDYDRIRRLCLPRSFLRENGINKTG--EIYLLGKDGKKWLTNLQRDKNG-TMKMEMGLKDFVKANGLKMSESFTLELIW-EDTTPML 436
                      778889*********************99877..8***************655554.477999***********************.8888999 PP

                      EEE- CS
               B3  95 kvfr 98 
                      +++ 
  Thhalv10000097m 437 SLCP 440
                      9986 PP
4B340.55e-135135991099
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      v++s++l lp++f++++g+ k +  ++t+  ++g + +  l    ++g + l+  Wk F++ang+++g++++++++++ +++++v+k++++
  Thhalv10000097m 513 VSSSSNLHLPRQFMKANGIGKLG--KITMLGKEGTKCSAFL--LSRDGFVALGIDWKWFCEANGVRTGESFTLEFISEqTKTTYVLKFCSR 599
                      567788***********988655..8************999..999999***************************9989999****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-169105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.2519103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-159107IPR015300DNA-binding pseudobarrel domain
CDDcd100178.63E-131098No hitNo description
SMARTSM010191.1E-1812103IPR003340B3 DNA binding domain
PfamPF023629.9E-92095IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-20170274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-18174275IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.6E-22178275IPR003340B3 DNA binding domain
PROSITE profilePS5086313.916178274IPR003340B3 DNA binding domain
CDDcd100173.36E-15178273No hitNo description
PfamPF023627.6E-19179273IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-18342446IPR015300DNA-binding pseudobarrel domain
CDDcd100178.72E-15345440No hitNo description
Gene3DG3DSA:2.40.330.103.4E-17346447IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.4E-29347442IPR003340B3 DNA binding domain
PfamPF023626.2E-18347441IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449347442IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-12490597IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-14495600IPR015300DNA-binding pseudobarrel domain
CDDcd100172.97E-9501598No hitNo description
PROSITE profilePS508638.572504599IPR003340B3 DNA binding domain
SMARTSM010192.2E-16509600IPR003340B3 DNA binding domain
PfamPF023621.6E-11513599IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAKPTLLLHP QFFHTLVPGF NTHLTIPLEF FSKYIEGKTS VEKTTAELKS DSSDITWKVK  60
MTGRRLSDGW EEFAVANNFR TGDVVVVRYE GDMVFHVSDL GSSCCEIQDI PPLSNNSYGQ  120
DDIGKNLLKK RLHPRTQVVF SSNDVDDEDN LEIPVKKKAK KNSPEAEEVS SSSSDDSCFV  180
AMVTPSSLRT DKLYLPQYVT NSSGITRKCR KIVLTDGEER SWALDLRFSK SSDSFYISRG  240
WRKFCEENGR EAESFFMFKL VRNGETPVLG FCPSESCNDK RQRNCSEASG RESFSTEISS  300
GEENIEGESS EDDCSSMESL METKEKKCSL KRRILSCSSY SPRYKRFVTF TLPPDYDRIR  360
RLCLPRSFLR ENGINKTGEI YLLGKDGKKW LTNLQRDKNG TMKMEMGLKD FVKANGLKMS  420
ESFTLELIWE DTTPMLSLCP AECSIDRGAG GECSETDQEN SLSIEPSSYE KISKDENKSV  480
STKPRSRDSS SAIQNRFAEL TLTPEDVRAC KLVSSSSNLH LPRQFMKANG IGKLGKITML  540
GKEGTKCSAF LLSRDGFVAL GIDWKWFCEA NGVRTGESFT LEFISEQTKT TYVLKFCSRE  600
TNKYKIC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000097m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013952.10.0B3 domain-containing protein REM13
SwissprotP0CAP51e-170REM13_ARATH; B3 domain-containing protein REM13
TrEMBLV4L7W80.0V4L7W8_EUTSA; Uncharacterized protein
STRINGXP_006405007.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-159DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]