PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG047091t1
Common NameTCM_047091
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 1044aa    MW: 114430 Da    PI: 4.7774
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG047091t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-183985148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Thecc1EG047091t1 39 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85
                      799****************************9.************986 PP
2Myb_DNA-binding63.15.4e-2091137148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+W++eEdel++++v++ G++ W+tIa++++ gR +kqc++rw+++l
  Thecc1EG047091t1  91 KGPWSKEEDELIIELVNKIGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137
                       79******************************.*************97 PP
3Myb_DNA-binding47.34.6e-15143185145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  Thecc1EG047091t1 143 KEAWTQEEELALIRAHQIFGNR-WAELTKFLP-GRTDNAIKNHWN 185
                       579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0153485IPR017930Myb domain
SuperFamilySSF466894.81E-163592IPR009057Homeodomain-like
SMARTSM007172.2E-153887IPR001005SANT/Myb domain
PfamPF002498.9E-163985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-234196IPR009057Homeodomain-like
CDDcd001673.65E-144285No hitNo description
PROSITE profilePS5129432.1986141IPR017930Myb domain
SuperFamilySSF466895.24E-3188184IPR009057Homeodomain-like
SMARTSM007171.9E-1890139IPR001005SANT/Myb domain
PfamPF002491.3E-1891137IPR001005SANT/Myb domain
CDDcd001675.93E-1693137No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2797141IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-21142192IPR009057Homeodomain-like
PROSITE profilePS5129418.974142192IPR017930Myb domain
SMARTSM007177.1E-15142190IPR001005SANT/Myb domain
PfamPF002494.3E-13143186IPR001005SANT/Myb domain
CDDcd001671.54E-11145185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1044 aa     Download sequence    Send to blast
MEGDRTISTP SVGLSISDGA QTMRALHGRT SGPTRRSTKG QWTAEEDEIL RKAVQRFKGK  60
NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE LIIELVNKIG PKKWSTIAQH  120
LPGRIGKQCR ERWHNHLNPA INKEAWTQEE ELALIRAHQI FGNRWAELTK FLPGRTDNAI  180
KNHWNSSVKK KLDSYIASGL LDQFQFPLLA NQSQPMPSSS SRVQSNVDDS GAKSRTEAED  240
ISECSQESSM IGCSQSASDM ANAAVNTREQ QFHLSEMPGV EKEKNSSPAL CSEEYYPSLE  300
DVNFSIPEIS CEAGYSASGD YQFSLPNLPN ISSIELGQES SGLPTHCIDA SESHEMMNAA  360
FQTSVGLNAP TSFVNMVTTS DKPEHMLITD DECCRVLFSE AVNDGCFASE NFTQGSNIVE  420
LGGCTSSSLC QASDIQISET GRTPASQSNC PSRSEVLATS CCQYFVSPSV ASVEYGSLMS  480
GREPSQLNGQ PFGTQEQEFT MNAYDGFIYT NDDHTGNTDL QEQSYLAKDS LKLVAVNSFG  540
SESDAMQTCP TMDDKPNLPE EQDVGALCYE PPRFPSLDIP FFSCDLIPSG SDMQQEYSPL  600
GIRQLMMSSM NCITPFRLWD SPSRDDSPDA VLKSAAKTFT GTPSILKKRH RDLLSPLSER  660
RSDKKLETDM TSSLTKDFSR LDVMFDESGT GSTSQPSQSE PKTHSGASVE EKENLCQAFD  720
GERDNGGDRT ESLDDKAQKK DSNGINSHGN MKKEACDIDT KAKTDADASN KVVQRPSAVL  780
IEHNINDLLL FSPDQVGLKV DRPLLASSTR TPRNQYHKSF GAISNQGFAS ECLSGNACIV  840
VSSPTLKIKN SEGHSIAVTT VQCVTSSATA ENLVDNAGID AAIENHNIFG ETPFKRSIES  900
PSAWKSPWFI NSFVPGPRID TEITIEDIGY LMSPGDRSYD AIGLMKQLSE HTAAAYADAL  960
EVLGNETPES IVKGRRSNNP NVNEDKENNQ LESRSHLASN ILAERRTLDF SECGTPGKGT  1020
ENGKSSTSMS SFSSPSYLLK GCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-70391926159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-70391926159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012060.20.0PREDICTED: myb-related protein 3R-1
TrEMBLA0A061GRG00.0A0A061GRG0_THECC; Myb domain protein 3r-4, putative
STRINGEOY296790.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]