PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG046366t1
Common NameTCM_046366
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 43aa    MW: 4929.72 Da    PI: 9.8942
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG046366t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like51.22.8e-161292755
           G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55
                      AtPk++le+m+++gL+l hvkSHLQkYRl
  Thecc1EG046366t1  1 ATPKAVLEVMDIDGLSLFHVKSHLQKYRL 29
                      9***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015571.4E-11130IPR006447Myb domain, plants
SuperFamilySSF466892.69E-6129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-13129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 43 aa     Download sequence    Send to blast
ATPKAVLEVM DIDGLSLFHV KSHLQKYRLG KFSVKEWQDT AKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976110.12e-23PREDICTED: protein PHR1-LIKE 2
TrEMBLS1SIQ52e-23S1SIQ5_THECC; Uncharacterized protein (Fragment)
STRINGEOY205173e-24(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.23e-12G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]