PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 385aa MW: 42428.2 Da PI: 6.0874

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG045715t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +++ +v ++G+g+W++++++ g++R++k+c++rw +yl Thecc1EG045715t1 14 KGLWTEEEDAKILAYVSKHGTGNWTAVPKKAGLRRCGKSCRLRWTNYL 61 678*******************************************97 PP
2	Myb_DNA-binding	42.3	1.7e-13	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++ ++E+el++++++ G++ W+ Ia+ ++ gRt++++k++w++ Thecc1EG045715t1 67 RESFAPQEEELIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWNT 110 567889**************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-25	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.472	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	7.7E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.49E-12	17	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.8E-24	64	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.07	66	116	IPR017930	Myb domain
SMART	SM00717	8.5E-13	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-12	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	3.80E-9	72	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MVRPPCCDKL NVKKGLWTEE EDAKILAYVS KHGTGNWTAV PKKAGLRRCG KSCRLRWTNY 60 LRPDLKRESF APQEEELIIR LHAAIGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG 120 IDPVTHKPFS QILADYGNIG GLPKSRTRIG SLNRDMKNAF LLKAEPYPSP AAAAEGLMTT 180 IASSGMEPIQ DNFFANNSIN HHADSDSSLD LLSQLQAIKA LVTEASNYTG HQTISPDQFP 240 NECSLSSSPS SSTCSTCSTA AQQKSALAFS WRDFLLEDAF LPADHPQGQE DHALEFSSRD 300 FAGHQTPNVV PQSHSNNEIS AERKVDNNNV NNNHNGVQGM DSGVPSYGFH ASSSTDDSSF 360 IATMLDQENE MFSEFANLLE DPCY*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MVRPPCCDKL NVKKGLWTEE EDAKILAYVS KHGTGNWTAV PKKAGLRRCG KSCRLRWTNY  60
LRPDLKRESF APQEEELIIR LHAAIGSRWS IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG  120
IDPVTHKPFS QILADYGNIG GLPKSRTRIG SLNRDMKNAF LLKAEPYPSP AAAAEGLMTT  180
IASSGMEPIQ DNFFANNSIN HHADSDSSLD LLSQLQAIKA LVTEASNYTG HQTISPDQFP  240
NECSLSSSPS SSTCSTCSTA AQQKSALAFS WRDFLLEDAF LPADHPQGQE DHALEFSSRD  300
FAGHQTPNVV PQSHSNNEIS AERKVDNNNV NNNHNGVQGM DSGVPSYGFH ASSSTDDSSF  360
IATMLDQENE MFSEFANLLE DPCY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-29	14	116	7	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	8e-38	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017972752.1	0.0	PREDICTED: transcription factor MYB35
TrEMBL	S1SMA0	0.0	S1SMA0_THECC; Duplicated homeodomain-like superfamily protein, putative
STRING	EOY20284	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	1e-76	MYB family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG045715t1
Entrez Gene	18507040

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]