PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG044725t1
Common NameTCM_044725
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 322aa    MW: 35204.5 Da    PI: 7.2887
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG044725t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05141163123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C++ Fs++  L  H++ H
  Thecc1EG044725t1 141 FSCNYCKREFSTSQALGGHQNAH 163
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077274.9E-6451IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF576671.92E-6138168No hitNo description
Gene3DG3DSA:3.30.160.604.0E-4139167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-6140165IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.718141168IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLPIYLLVYV DNIILSGRLF SQLDNFILEL DNEFSTKCFG QIHYFLAMVI ISAELCPSEA  60
SSISATLEGV TPNKVNEAAK ASESSLGILL DLKLFSDDSL CKPKIELNLF NPMSPTSSHS  120
KDSGDHQTLR EKRSDDSNRV FSCNYCKREF STSQALGGHQ NAHKQERALA KRRQGMDVNG  180
FGFPPYPYNP YSTISPHPFY GSLNRSPLGV RLDSMIHKPS YPWTSIGGFH HLGHGWSSQA  240
ILTPPRPTIS ERLSMNNGGF GISGPSSSSR FQETGAPCSF SDISQANVAT NKAARSDYLQ  300
PSNPSGSDNN DASKIDLSLK L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984355.10.0PREDICTED: zinc finger protein 1
TrEMBLA0A061FQI60.0A0A061FQI6_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY195800.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2013445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-20zinc-finger protein 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]