PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG044478t1
Common NameTCM_044478
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 279aa    MW: 31738.7 Da    PI: 8.8273
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG044478t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-16103146249
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                        y+GVr ++ +g+Wv+eIr+p++   + r++lg+f ta++Aa+a++ a
  Thecc1EG044478t1 103 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTADMAARAHDVA 146
                       69****998.**********843...6*******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-20103162IPR016177DNA-binding domain
PfamPF008471.3E-10103147IPR001471AP2/ERF domain
SMARTSM003809.3E-34103166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-30103162IPR001471AP2/ERF domain
PROSITE profilePS5103222.247103160IPR001471AP2/ERF domain
CDDcd000181.06E-29104162No hitNo description
PRINTSPR003672.7E-10104115IPR001471AP2/ERF domain
PRINTSPR003672.7E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKSYLFVSNY LKSQCSTKHN LLSLVMSEST KGMDCSDKDF FNLITYSCSI NTFASPSSLA  60
FMDLKYIKQS FRKKRSIREK RLTEANERGE KSFKKGKAYR HPTYRGVRMR SWGKWVSEIR  120
EPRKKSRIWL GTFPTADMAA RAHDVASMVI KGDSAYLNFP ESAHELPRPA SSSRRDIQEA  180
ANKAAYAMVD QHNAMIEVKT EPSQDEMPVP QSPSTTTMSC ETQGSPSSQS VDSDSMWFDL  240
PDLSLEANSS HRFGYTSWWQ QAGIDTEFQF EETMGWDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1695160672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984340.11e-162PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ73e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A061FX400.0A0A061FX40_THECC; Ethylene response factor 2
STRINGEOY193740.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]