PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG043551t1

Common Name

TCM_043551

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 323aa MW: 35936.1 Da PI: 6.8869

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG043551t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.4	2.1e-14	46	139	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +W++ +L+ea++e+ ++l+rg +Weev++++ ++++ +s +qCk+k++nl+kryk + ++ +++ + ss++ Thecc1EG043551t1 46 EWSDTALACLLEAYTEKFNQLNRG----RDWEEVAEALserraggadedrgEKQKTGKSVEQCKNKIDNLKKRYKVELQRISGG--GGSSHWH 132 5********************9....89***************99999999**************999999986..78889 PP trihelix 81 yfdqlea 87 +f+q+ea Thecc1EG043551t1 133 WFKQMEA 139 *****95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-17	45	140	No hit	No description
SuperFamily	SSF53633	4.19E-14	236	312	IPR001048	Aspartate/glutamate/uridylate kinase
Gene3D	G3DSA:3.40.1160.10	5.1E-15	236	312	IPR001048	Aspartate/glutamate/uridylate kinase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016310	Biological Process	phosphorylation
GO:0016301	Molecular Function	kinase activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MSCHENFSLI HPHAPPALPS KNSISLLRTP TTIKKPEPEY RKDSEEWSDT ALACLLEAYT 60 EKFNQLNRGR DWEEVAEALS ERRAGGADED RGEKQKTGKS VEQCKNKIDN LKKRYKVELQ 120 RISGGGGSSH WHWFKQMEAI MGNLGSCSSG RGLEGEDRSG LSNLGKQATK SYLVLLCCRR 180 SPSPTAGHEP SNILRKEKSS FVWWHWGWHW ESSLYSRHSS SSESFRDCRH SMSGALLKGA 240 NGDGVYDCHS DNGSVALDRI SFREVVSSGF TSMDMMAITY CEENGIPVVV FNLLEPGNIS 300 RALCGERVGT SIDQQGRDES EL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017984728.1	1e-122	PREDICTED: uncharacterized protein LOC18586626
TrEMBL	A0A061FNS2	0.0	A0A061FNS2_THECC; Aspartate/glutamate/uridylate kinase family protein, putative
STRING	EOY18985	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23002	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	4e-36	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG043551t1
Entrez Gene	18586626

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]