PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042823t1
Common NameTCM_042823
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 476aa    MW: 54634.5 Da    PI: 9.908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042823t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.4e-051722111155
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       rR +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  Thecc1EG042823t1 172 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 211
                       7999**************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.699161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-4172215No hitNo description
SuperFamilySSF474594.84E-9172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-7172226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF557534.16E-45334473No hitNo description
Gene3DG3DSA:3.40.20.101.1E-47340473IPR029006ADF-H/Gelsolin-like domain
CDDcd112861.55E-64342473No hitNo description
PROSITE profilePS5126338.56343475IPR002108Actin-depolymerising factor homology domain
SMARTSM001026.6E-60348475IPR002108Actin-depolymerising factor homology domain
PfamPF002413.5E-35350472IPR002108Actin-depolymerising factor homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0003779Molecular Functionactin binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MRNALLPPVS SQFYIIGNNE VQMPYLDVLM QMESKGNVHG GGFSMESKIF NNDTQLRDGA  60
FVIPYQSHFN SDLQDYQSGS SNCDNNFQQS MPLTSKLALP QFEQDIQKLQ NGRKRPIVVN  120
DQMPLNGTSA LNEWKKKNKR KRLPSFEQQQ SRQITEAVTE IKQCRMHMPA VRRSQKLSDK  180
ITALQKLVSP YGKTDTASVL QEASLYIKLL QEQIQNLFQM LSSSYNSLRA IHPQEIGKKQ  240
QDLRSRGLCL VPISFTQKVT KEDQKEKRES KEKRRKKNNK SKRLGGHFQA VIANPKNREK  300
KFIYTFLLPF RSLFFSEEAL DFLGLFSLFS SLSRETMANA ASGMAVDDDC KLKFLELKAK  360
RTYRFIVFKI EEKQKQVVVE KLGEPTDSYE AFTASLPADE CRYAVYDFDF VTEENCQKSR  420
IIFIAWSPDT SKVRSKMIYA SSKDRFKREL DGIQVELQAT DPTEMGLDVI KSRTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1f7s_A2e-803374741138ACTIN DEPOLYMERIZING FACTOR (ADF)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0881561e-177DQ088156.2 Gossypium hirsutum actin depolymerizing factor (ADF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021295682.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC110425179
TrEMBLA0A061FMX50.0A0A061FMX5_THECC; Actin depolymerizing factor 4 isoform 1
STRINGEOY182230.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17246610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.16e-20bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]