PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042366t1
Common NameTCM_042366
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 431aa    MW: 47418.9 Da    PI: 5.7438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042366t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13225272254
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h + Er RR ++N+++  Lr ++P++      K + a+i+  A++YIk+L
  Thecc1EG042366t1 225 TTKHFATERERRVHLNDKYKALRNMVPNP-----SKTDRASIVGDAINYIKEL 272
                       579*************************9.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.383223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-16223291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-11224276No hitNo description
PfamPF000101.6E-10226272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-14226281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MKVYEDSGCF DPNSMTDCQA LMGGLAGGIS TNSQNSLEDN LNLSSYNNHQ HEDASAAAAA  60
VEMEIQQHYM LDNNTTNNNN TTLLIPQLTQ ELSYDQSNWD ADQQSFNMVP SSSSPEAAYP  120
ATPDLLNLFH LPRCSFLPNS SISFESAPAS SVVYDPLFHL NLPPQPPVFR ELLQSLPHGY  180
TLPADDREAS GGGGLYHDGD NGILEFNRGI SMAGHGKGRN RAGKTTKHFA TERERRVHLN  240
DKYKALRNMV PNPSKTDRAS IVGDAINYIK ELVRTVNELK LLVEKKRCGQ GRSKRLKTED  300
AGSAADAGDV ECKPLGDPDQ CYNSSLRSSW LQRKSKDTEV DVRIIDDEVT IKLVQRKKIN  360
CLLFVSRLLD ELQLDLHHVA GGHVGDYYSF LFNTKIYEGS SVYASAIANK LIEGVDRQYA  420
AAPPTSSTCL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007008755.20.0PREDICTED: transcription factor bHLH91
RefseqXP_007008756.20.0PREDICTED: transcription factor bHLH91
SwissprotQ8GX461e-115BH091_ARATH; Transcription factor bHLH91
TrEMBLA0A061FKG90.0A0A061FKG9_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY175650.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-104bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]