![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG042062t1 | ||||||||
Common Name | TCM_042062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 845aa MW: 92070.9 Da PI: 5.9992 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 26 | 83 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Thecc1EG042062t1 26 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83 5789****************************************************97 PP | |||||||
2 | START | 159.3 | 2.9e-50 | 165 | 372 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W ++++ e+ g g+++ Thecc1EG042062t1 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRNLEVFTMFPAGngGTIE 256 7899******************************************************.7777777777*******9999999998888**** PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++++a+++l+p Rdf+++Ry+ +l+ g++v++++S++ p+ +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++l Thecc1EG042062t1 257 LVYTQTYAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGPSaaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVL 349 ****************************************99999988999****************************************** PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s+ + ++k++ a+l++ + Thecc1EG042062t1 350 RPLYESSKVIAQKMTIAALRYIR 372 ******************99865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.143 | 20 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-15 | 22 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.91E-16 | 24 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.81E-16 | 25 | 85 | No hit | No description |
Pfam | PF00046 | 7.5E-16 | 26 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 27 | 83 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.78E-6 | 77 | 116 | No hit | No description |
PROSITE profile | PS50848 | 27.25 | 155 | 383 | IPR002913 | START domain |
CDD | cd08875 | 1.10E-67 | 159 | 375 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.6E-20 | 164 | 368 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.26E-35 | 164 | 376 | No hit | No description |
SMART | SM00234 | 1.8E-40 | 164 | 374 | IPR002913 | START domain |
Pfam | PF01852 | 8.9E-48 | 165 | 372 | IPR002913 | START domain |
Pfam | PF08670 | 1.3E-49 | 700 | 843 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 845 aa Download sequence Send to blast |
MAMAVAQHRE SSSGSSINKH LDAGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC 120 ENGYMRQQLH TVNASAATDA SCDSVVTTPQ HSLRDANNPA GLLSIAEETL AEFLSKATGT 180 AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVSLE PTKIAEILKD RPSWFRDCRN 240 LEVFTMFPAG NGGTIELVYT QTYAPTTLAP ARDFWTLRYT TTLENGSLVV CERSLSGSGA 300 GPSAAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHMNL EAWSVPEVLR PLYESSKVIA 360 QKMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAING FNDDGWSIMN 420 CDGAEDVIIA INSSKNLSSS SNPANALSFL GGVLCAKASM LLQNVPPAVL VRFLREHRSE 480 WADFNVDAYS AASLKAGTYS YPGMRPTRFT GSQIIMPLGH TIEHEELLEV IRLEGHSLAQ 540 EDAFLSRDIH LLQICSGIDE NAVGACSELV FAPIDEMFPD DAPLLPSGFR IIPLDSKPSD 600 TQDSLTTNRT LDLTSSLEVG TATNHAAGDA PSCQNSRSVL TIALQFPFDS NLQDNVAAMA 660 RQYVRSVIAS VQRVAMAISP SGLSPTVGPK LSPGSPEALT LAHWICQSYS YHLGAELLRA 720 ESLGGDAVLK NLWQHQDAIL CCSLKSLPVF IFANQAGLDM LETTLVALQD ITLDKIFDES 780 GRKALCSDFA KLMQQGFAYL PAGICMSTMG RNVSYEQAVA WKVLAADEST VHCLAFSFVN 840 WSFV* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021277981.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A061GY60 | 0.0 | A0A061GY60_THECC; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1 | ||||
STRING | EOY34369 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4779 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG042062t1 |
Entrez Gene | 18590882 |