PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042000t1
Common NameTCM_042000
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family AP2
Protein Properties Length: 496aa    MW: 54262.9 Da    PI: 6.2479
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042000t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17153202155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Thecc1EG042000t1 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 202
                       78*******************......55************************997 PP
2AP240.37.8e-13245295155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Thecc1EG042000t1 245 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 295
                       89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15153211IPR016177DNA-binding domain
PfamPF008475.7E-9153202IPR001471AP2/ERF domain
SMARTSM003806.0E-33154216IPR001471AP2/ERF domain
CDDcd000183.12E-11154212No hitNo description
Gene3DG3DSA:3.30.730.104.4E-17154210IPR001471AP2/ERF domain
PROSITE profilePS5103217.622154210IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-16245303IPR016177DNA-binding domain
CDDcd000181.75E-24245303No hitNo description
PfamPF008475.9E-8245295IPR001471AP2/ERF domain
PROSITE profilePS5103215.277246303IPR001471AP2/ERF domain
SMARTSM003803.8E-31246309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15246303IPR001471AP2/ERF domain
PRINTSPR003679.6E-6247258IPR001471AP2/ERF domain
PRINTSPR003679.6E-6285305IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MLDLNLNAAS TESTQDCDSA APFSDNLNEG SGNQMDESGT SNSSVVNDDD ESCSTRANGD  60
AFTLSFDILK VGSRGSEYQN DDAAKVVTKE LFPVKGVGGD FGSCEGQSSG NGDNNKWIDL  120
SFERKEAGEP RVMQQQASQT VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTAHAAA RAYDRAAIKF RGVEADINFT LSDYEEDMKQ MKNLTKEEFV HILRRQSTGF  240
SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDNEV EAARAYDKAA IKCNGREAVT  300
NFEPRSYEGE MTFDTSNEDA LYPGNDHNLD LNLGISPPVG NGPKENEGHL HFHTGPYDVH  360
GAKSLRAENP AAATVGGPPF KGPVGPSDQP IFWNSGYPRF FPSEERAMVN RVELGPPQGL  420
PDWAWQTHGQ VSVTPMPLFS TAASSGFSFS ATPRSAAILP SKPLDPTTHS LCFASPAATN  480
TPQTYFHIKP PQAPP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844371e-134KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983593.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-134RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A061GWQ90.0A0A061GWQ9_THECC; AP2.7 isoform 1
STRINGEOY342650.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-139related to AP2.7
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]