PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041861t2
Common NameTCM_041861
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Dof
Protein Properties Length: 320aa    MW: 34274 Da    PI: 9.8116
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041861t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.61.2e-3763123262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       +e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nkk++
  Thecc1EG041861t2  63 PEVALKCPRCQSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKNK 123
                       56789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3447118IPR003851Zinc finger, Dof-type
PfamPF027012.8E-3266121IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.15267121IPR003851Zinc finger, Dof-type
PROSITE patternPS01361069105IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWQQTNH IQQGTGSENP QLPPPPHHVG AGAGSIRPGS MADRARLAKI  60
PQPEVALKCP RCQSTNTKFC YFNNYSLSQP RHFCKTCRRY WTRGGALRSV PVGGGCRRNK  120
KNKSSSSKSS ASAEKQVGNS NSTSAGNIPS EITGHLPRQT PHLPFMASLQ NFSQYGLGNI  180
GLNFAGIQGQ IGATSTGASG QADMGFQIGT NSGMSSAIFS AEGTHHQQFP FFEPANGLYQ  240
FQSEGMEASS SMVGESQLLR SMSSSSRASQ TAPVKMENNQ GLNLSRQLLG VSENNQYWGG  300
NNWTDNLSGL NSSNTNHLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00281DAPTransfer from AT2G28810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016451.20.0PREDICTED: dof zinc finger protein DOF2.2 isoform X2
SwissprotQ9ZV335e-59DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBLA0A061GW340.0A0A061GW34_THECC; OBF-binding protein 3, putative isoform 2
STRINGEOY340690.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.12e-54Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]