PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 321aa MW: 34402.2 Da PI: 9.8116

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041861t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.6	1.2e-37	64	124	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nkk++ Thecc1EG041861t1 64 PEVALKCPRCQSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKNK 124 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-34	48	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	67	122	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.152	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MVFSSVPVYL DPPNWQQQTN HIQQGTGSEN PQLPPPPHHV GAGAGSIRPG SMADRARLAK 60 IPQPEVALKC PRCQSTNTKF CYFNNYSLSQ PRHFCKTCRR YWTRGGALRS VPVGGGCRRN 120 KKNKSSSSKS SASAEKQVGN SNSTSAGNIP SEITGHLPRQ TPHLPFMASL QNFSQYGLGN 180 IGLNFAGIQG QIGATSTGAS GQADMGFQIG TNSGMSSAIF SAEGTHHQQF PFFEPANGLY 240 QFQSEGMEAS SSMVGESQLL RSMSSSSRAS QTAPVKMENN QGLNLSRQLL GVSENNQYWG 300 GNNWTDNLSG LNSSNTNHLL *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007016450.2	0.0	PREDICTED: dof zinc finger protein DOF2.2 isoform X1
TrEMBL	A0A061H030	0.0	A0A061H030_THECC; OBF-binding protein 3, putative isoform 1
STRING	EOY34069	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.1	2e-54	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG041861t1
Entrez Gene	18590711

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]