PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 667aa MW: 75260.5 Da PI: 5.28

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041813t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	364.5	1.5e-111	291	661	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL++cAeav s+d+++a+ +L ++++++sp g++ qR a+yf++AL+arla+++se y+al +++ + + ++ a kl+ ++P++k+ Thecc1EG041813t1 291 LRTLLIQCAEAVGSNDFRNANDFLMQIRNHSSPFGNASQRKAHYFAKALEARLAGTGSEEYAALVSKRIP----TASVEACKLLISACPFMKV 379 6789*********************************************************9999997....5677899******** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s++ + ++I++ +++++r+Hii f++ +Gl+W +L+q L++Rp++pp+lRiTg++ p++g s+ ++ee g+ La+ ++++++pfe+n +++ Thecc1EG041813t1 380 SNFFTTEMIMKLAKKATRIHIIHFGVPYGLKWSSLIQRLSTRPGNPPTLRITGIDLPQPGveSAGRVEEFGHFLANCCKQFNIPFEYNG-ITQ 471 *******************************************************9999**********************.799 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e+++le+L++ ++E+++Vn+ ++l +++de ++l+s+rd+vL+lv++++P+++++ + +n++ F+ rf eal+y+s++fd+le+ +p+ Thecc1EG041813t1 472 KWESIQLEDLKIAKDEVVVVNCLYRLRHIVDEMADLSSPRDTVLNLVRKINPNIFIHGIVNGAYNAPFFVSRFREALYYFSTMFDMLEEIAPS 564 ***************************************************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e++er+++E+ + g+ei nvvaceg+er+er et+++W+ r +aG++++pl++++ ++ak+ ++ ++ + + v+e+++++++gWk+r L+++ Thecc1EG041813t1 565 EDQERMVLEENMYGKEILNVVACEGSERIERPETYKQWQVRNLRAGLRQLPLKQEILNSAKAHVKLHYHKDFLVDEDKNWILQGWKGRILFAL 657 ****************************************************************888****************** PP GRAS 371 SaWr 374 S+Wr Thecc1EG041813t1 658 SFWR 661 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.042	265	641	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.2E-109	291	661	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MNPSSYSTVA DPADESNFPN AFYITTPIFT EDANDNTFLL QDSTVGAAES SFADILAEKY 60 PLSTTLPFPI CSDLDWSSCI TVANNLVQSD FICDLARFEV SSMLSPQVEH AFQDYPQPVS 120 QSLFPDNSFG EAVDVPVIDP VNKSLVPDLV NQDLCCESLY DCQFLEGGVK ETQKLIAYGD 180 HMSAEEESPV AAERETSEEM DHSFCKTRKV ETRLQICGEG EIGREHGRVV CPEQFEQPDM 240 FKNDVSAAAT ADIAWRNEAR MIMNACGEPK RNSAGTKKRR RSVNKRNLVD LRTLLIQCAE 300 AVGSNDFRNA NDFLMQIRNH SSPFGNASQR KAHYFAKALE ARLAGTGSEE YAALVSKRIP 360 TASVEACKLL ISACPFMKVS NFFTTEMIMK LAKKATRIHI IHFGVPYGLK WSSLIQRLST 420 RPGNPPTLRI TGIDLPQPGV ESAGRVEEFG HFLANCCKQF NIPFEYNGIT QKWESIQLED 480 LKIAKDEVVV VNCLYRLRHI VDEMADLSSP RDTVLNLVRK INPNIFIHGI VNGAYNAPFF 540 VSRFREALYY FSTMFDMLEE IAPSEDQERM VLEENMYGKE ILNVVACEGS ERIERPETYK 600 QWQVRNLRAG LRQLPLKQEI LNSAKAHVKL HYHKDFLVDE DKNWILQGWK GRILFALSFW 660 RPSKEP*

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MNPSSYSTVA DPADESNFPN AFYITTPIFT EDANDNTFLL QDSTVGAAES SFADILAEKY  60
PLSTTLPFPI CSDLDWSSCI TVANNLVQSD FICDLARFEV SSMLSPQVEH AFQDYPQPVS  120
QSLFPDNSFG EAVDVPVIDP VNKSLVPDLV NQDLCCESLY DCQFLEGGVK ETQKLIAYGD  180
HMSAEEESPV AAERETSEEM DHSFCKTRKV ETRLQICGEG EIGREHGRVV CPEQFEQPDM  240
FKNDVSAAAT ADIAWRNEAR MIMNACGEPK RNSAGTKKRR RSVNKRNLVD LRTLLIQCAE  300
AVGSNDFRNA NDFLMQIRNH SSPFGNASQR KAHYFAKALE ARLAGTGSEE YAALVSKRIP  360
TASVEACKLL ISACPFMKVS NFFTTEMIMK LAKKATRIHI IHFGVPYGLK WSSLIQRLST  420
RPGNPPTLRI TGIDLPQPGV ESAGRVEEFG HFLANCCKQF NIPFEYNGIT QKWESIQLED  480
LKIAKDEVVV VNCLYRLRHI VDEMADLSSP RDTVLNLVRK INPNIFIHGI VNGAYNAPFF  540
VSRFREALYY FSTMFDMLEE IAPSEDQERM VLEENMYGKE ILNVVACEGS ERIERPETYK  600
QWQVRNLRAG LRQLPLKQEI LNSAKAHVKL HYHKDFLVDE DKNWILQGWK GRILFALSFW  660
RPSKEP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-47	297	662	25	380	Protein SCARECROW
5b3h_A	8e-47	297	662	24	379	Protein SCARECROW
5b3h_D	8e-47	297	662	24	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017982430.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	Q9XE58	1e-150	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A061GX40	0.0	A0A061GX40_THECC; GRAS family transcription factor, putative
STRING	EOY33998	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-153	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Thecc1EG041813t1
Entrez Gene	18590667

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]