PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 385aa MW: 42577.9 Da PI: 8.6495

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041653t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	147	170	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F ++ L++H+ t H Thecc1EG041653t1 147 FPCTACGEIFQKPHFLEQHQATkH 170 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.598	147	175	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	149	170	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	8.25E-14	172	383	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.3E-6	318	383	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MAKTIGSVFF NKFLSLFILL LHLGCFIFTA KDHHKPAKKR KASPLSLPPP SLKPNKALSS 60 TWSCLKRIFS SSKANCKNTI QTHPTATTTP TLTSARNSQQ SLVSMIIPPE THLSESPPTR 120 HEKTSGSCPE SDISSDNQFF PLRNDIFPCT ACGEIFQKPH FLEQHQATKH AVSELIDGDS 180 GKNIVRIIFK TGWTDKVKNP EIHRILKIHN SPKILARFED YRELVKAKAA RNGIGRRYER 240 CIADGNELLR FYCSTFMCDL GLNGSSSICN QQYCSICGII KSGFSPKMDG IPTLSTSWRA 300 HVAIPEDVEE EFKFMNVKRA MLVCRVVAGR VGSEGEEIDK EDGGFDSVIG RGGGSGAHTN 360 VDEEELLVFN PRAVLPCFVI VYTV*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MAKTIGSVFF NKFLSLFILL LHLGCFIFTA KDHHKPAKKR KASPLSLPPP SLKPNKALSS  60
TWSCLKRIFS SSKANCKNTI QTHPTATTTP TLTSARNSQQ SLVSMIIPPE THLSESPPTR  120
HEKTSGSCPE SDISSDNQFF PLRNDIFPCT ACGEIFQKPH FLEQHQATKH AVSELIDGDS  180
GKNIVRIIFK TGWTDKVKNP EIHRILKIHN SPKILARFED YRELVKAKAA RNGIGRRYER  240
CIADGNELLR FYCSTFMCDL GLNGSSSICN QQYCSICGII KSGFSPKMDG IPTLSTSWRA  300
HVAIPEDVEE EFKFMNVKRA MLVCRVVAGR VGSEGEEIDK EDGGFDSVIG RGGGSGAHTN  360
VDEEELLVFN PRAVLPCFVI VYTV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007016151.2	0.0	PREDICTED: uncharacterized protein LOC18590526
Refseq	XP_007016152.2	0.0	PREDICTED: uncharacterized protein LOC18590526
TrEMBL	A0A061GVB3	0.0	A0A061GVB3_THECC; Zinc finger family protein isoform 1
STRING	EOY33771	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7919	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-116	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG041653t1
Entrez Gene	18590526

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]