PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041585t1
Common NameTCM_041585
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 404aa    MW: 44696.5 Da    PI: 8.218
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041585t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-07231253123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C+ Cgk F+r  nL+ H+r H
  Thecc1EG041585t1 231 HYCQVCGKGFKRDANLRMHMRAH 253
                       68*******************99 PP
2zf-C2H210.60.0018326349123
                       EEETTTT.EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                       y+C+ C+ k Fs  s+L++H + +
  Thecc1EG041585t1 326 YVCKRCNsKQFSVLSDLRTHEKHC 349
                       9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.71E-6229257No hitNo description
SMARTSM003550.0034231253IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-6231257IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653231258IPR007087Zinc finger, C2H2
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
SMARTSM0035560288321IPR015880Zinc finger, C2H2-like
SMARTSM0035520326348IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MISGATSCFS NASECLPMYS VAEDMVPSSL EAGSGPEAHS SSLLYNLAIL KDKVHQVQSL  60
VSILIAPDQT NPESTSLAIA SMGSLVQEII VTASSMIFIC QQMSLGTTSA GNSNSTTDQV  120
HQQHVRVPDN NGISQQPNFS HDNCVGNIVQ ERGKGFYSST ETITWYSDHC NNRNYNNNSS  180
RSLQVSNDDK LEIRKELPRR SEISEGSQGI SMKNYDIVEV DAADLLAKYT HYCQVCGKGF  240
KRDANLRMHM RAHGDEYKTS AALTNPMKIH HEGSATGSNC STNLPKKFSC PQEGCRWNQK  300
HAKFQPLKSM ICMKNHYKRS HCPKMYVCKR CNSKQFSVLS DLRTHEKHCG DLKWQCSCGT  360
TFSRKDKLMG HVALFVGHSP VVTPLTKPAK LELQATSMQL DDR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016060.20.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT241e-111STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A061GZV20.0A0A061GZV2_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY336790.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-111C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]