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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG041493t1 | ||||||||
Common Name | TCM_041493 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 30344.1 Da PI: 6.1721 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 52 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++k ++Wv+e+r+p++ + r++lg+f +e+Aa+a++ a+++l+g Thecc1EG041493t1 52 PVFRGVRQRK-GNKWVCEVREPYK---KSRIWLGTFPIPEMAARAYDVAALALRG 102 579******9.9*********765...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.2E-12 | 52 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-29 | 53 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.707 | 53 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-28 | 53 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-20 | 53 | 112 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-10 | 54 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.74E-29 | 54 | 112 | No hit | No description |
PRINTS | PR00367 | 2.4E-10 | 92 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MEHLELDSSS PSSSSSSCKS GSPDSESSSA EALPVSHKRK AGRKKFKETR HPVFRGVRQR 60 KGNKWVCEVR EPYKKSRIWL GTFPIPEMAA RAYDVAALAL RGKSAALNFP DSASVLPRAK 120 SSSAKDIQRA ALAAAEAFRP AAHCTSSASA ISLSLDISSH TTSSRTIEPE CSSSQISNAT 180 NQDKVLEPCL VEIKPIDQNE EKKVLDHSLM DHMPSSETLE NKPNQSNPLF VDEEALFNLP 240 GLLDSMAEGM LLTPPAMQRQ VDWDDDTAFT MNIDLWD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 51 | 110 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007015927.2 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A061GVL6 | 0.0 | A0A061GVL6_THECC; C-repeat/DRE binding factor 1, putative | ||||
STRING | EOY33546 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22192 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 2e-33 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG041493t1 |
Entrez Gene | 18590383 |
Publications ? help Back to Top | |||
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