PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041441t1
Common NameTCM_041441
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 378aa    MW: 42786.1 Da    PI: 9.5615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041441t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05217236120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       + C++C+k+F+r  n++ H+
  Thecc1EG041441t1 217 FACSICSKTFNRYNNMQMHM 236
                       78*****************9 PP
2zf-C2H215.93.7e-05301323123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk+F  k + ++H +++
  Thecc1EG041441t1 301 FMCRKCGKTFAVKGDWRTHEKNC 323
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.28E-6186240No hitNo description
SMARTSM003550.17217239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-5217236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741217244IPR007087Zinc finger, C2H2
PfamPF139122.7E-4217236IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SMARTSM00355190264296IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.33E-6287321No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5297321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704301321IPR007087Zinc finger, C2H2
SMARTSM0035535301321IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MIRVAKRLSK FITLIAKGME FTRERRRWGQ ECKEMGFRSY HVEDKNLCFQ APTFIEWLKP  60
SSTPNSSSLS SSSSSSSSSS SLSSSSSSPS VTQQVQFINP MTILKLPVSF QQQQQEIVQE  120
TIQCLPLLSR LSENKPLKEE DAGMKKEISV GIKEEKIEKV TVSLHIGLPN TGDPVIENKV  180
FKAEEPIKKT FHGCSFNTES RFWIPTPAQI LVGPMQFACS ICSKTFNRYN NMQMHMWGHG  240
SEYRKGPDSL KGTQPAAMLR LPCYCCAQGC KNNINHPRAK PLKDFRTLQT HYKRKHGAKP  300
FMCRKCGKTF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK GHSPHPSLEG  360
FEDDKECITG SEDEFAH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983975.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-130ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A061GZR00.0A0A061GZR0_THECC; WIP domain protein 3
STRINGEOY334690.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-122WIP domain protein 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]