PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040956t1
Common NameTCM_040956
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 471aa    MW: 52122.9 Da    PI: 9.2358
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040956t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000334870123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      + Cp C+k F++   L  Hir H
  Thecc1EG040956t1 48 HICPVCSKGFTSGKALGGHIRIH 70
                      68*******************99 PP
2zf-C2H213.40.00023127148223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +C +C+k F++  +L  H+r+H
  Thecc1EG040956t1 127 SCCICKKDFRSMKSLFGHMRNH 148
                       6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0244870IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-74872IPR007087Zinc finger, C2H2
SuperFamilySSF576674.78E-84870No hitNo description
Gene3DG3DSA:3.30.160.606.5E-44871IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.7854875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576674.78E-8121148No hitNo description
PROSITE profilePS501578.663126148IPR007087Zinc finger, C2H2
SMARTSM003550.29126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
PfamPF139127.1E-5128150IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGDQAAQAIE NLERESASME TSDLSPSKSN KLFLKLKVSN TLKRCGQHIC PVCSKGFTSG  60
KALGGHIRIH MKGNKNGRHR KISKLQPRNL HRAKAKKRIS KNTLLPKAAD GAVDLPSNDQ  120
EGSEKVSCCI CKKDFRSMKS LFGHMRNHPE RGWRGIRPPP SDKNSCCSSV SENDEAPEVD  180
QISCATERGS VSGSDLLKSL PKWTNTAKRC GKYTSDEIPE AAYCLMKLSR GESFDLGQSS  240
IAYQKYSSTT VKPIIDKCQS SGLTNKASEQ KQRSNIVLGK DMGEGKGKAS LKTESDQERA  300
PSEYKREDSY WPREEKKMEK SLAKELSCDN FIDKKTMVRE NKLKLNYADA TQIVENNRCF  360
DQFQKFPRKP DEEKGDPSTV EGRFRDKIIP SSQTPGSYPK NPSERLFEAP LDETASPAEG  420
KHLKSKPLFP TASQAAEGSQ VCPPKILDFD LNEPYAALDG EDTGSKITSI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14044TLKRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015319.20.0PREDICTED: uncharacterized protein LOC18590004
TrEMBLA0A061GU410.0A0A061GU41_THECC; Uncharacterized protein
STRINGEOY329380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.18e-24C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]