PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HB-other

Protein Properties

Length: 518aa MW: 58251.4 Da PI: 6.9955

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG040945t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ q+ +Le++++++r ps e++++LA++++Lte+q++ WF+ rR k+k+ Thecc1EG040945t2 20 KKRTVKTPAQVMALENFYKEHRFPSDEMKAQLAAQIRLTEKQISSWFCHRRLKDKR 75 8*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-19	4	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.293	16	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-17	16	76	IPR009057	Homeodomain-like
SMART	SM00389	6.2E-18	18	80	IPR001356	Homeobox domain
Pfam	PF00046	4.6E-16	20	75	IPR001356	Homeobox domain
CDD	cd00086	2.21E-17	20	76	No hit	No description
PROSITE pattern	PS00027	0	51	74	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MEDSAEVQTE ENKVSLDVNK KRTVKTPAQV MALENFYKEH RFPSDEMKAQ LAAQIRLTEK 60 QISSWFCHRR LKDKRRDESY ANGRQDHSSG VIQDRGSGLR QDSCGSIKQG DYRNVDPREV 120 ESRRIYGHDF PVADLTYERR SHQNPYNAHM EDTSSESSSS LHDQRFSESR DPYDMQISAN 180 LTQNGAITQI KPRIVKSMGY KPSGYLKVKG EMENPAVTAV KRQLGSHYQE DGPLLGIEFD 240 PLPPGAFEFR SSNLVNEPIY VGDPRQEHSP DISGVIKQPN LNIINEVHNP KMSSQASYME 300 DANLNTEHGS DRQDRKSHHQ LKYKSSFLCS NPFPGQNSSI NVYESSAGKT AVSDCKRSRM 360 SFKPAVERMG SDSFSNQPGP YGSKIANEQE KPWLHDDDNH TYKAPKNENL SKTSDLIHGC 420 SESLGTERGP SARMGKLEKL GGEWKPKREY PVRENIDPTN ELKVAKRVKV EFPQQNFVAN 480 ASHSRSLLLT NPTKGSSMDV PSSFSEDETA ETSSSLD*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MEDSAEVQTE ENKVSLDVNK KRTVKTPAQV MALENFYKEH RFPSDEMKAQ LAAQIRLTEK  60
QISSWFCHRR LKDKRRDESY ANGRQDHSSG VIQDRGSGLR QDSCGSIKQG DYRNVDPREV  120
ESRRIYGHDF PVADLTYERR SHQNPYNAHM EDTSSESSSS LHDQRFSESR DPYDMQISAN  180
LTQNGAITQI KPRIVKSMGY KPSGYLKVKG EMENPAVTAV KRQLGSHYQE DGPLLGIEFD  240
PLPPGAFEFR SSNLVNEPIY VGDPRQEHSP DISGVIKQPN LNIINEVHNP KMSSQASYME  300
DANLNTEHGS DRQDRKSHHQ LKYKSSFLCS NPFPGQNSSI NVYESSAGKT AVSDCKRSRM  360
SFKPAVERMG SDSFSNQPGP YGSKIANEQE KPWLHDDDNH TYKAPKNENL SKTSDLIHGC  420
SESLGTERGP SARMGKLEKL GGEWKPKREY PVRENIDPTN ELKVAKRVKV EFPQQNFVAN  480
ASHSRSLLLT NPTKGSSMDV PSSFSEDETA ETSSSLD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	76	RRLKDKRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015308.2	0.0	PREDICTED: uncharacterized protein LOC18589998
TrEMBL	A0A061GUR5	0.0	A0A061GUR5_THECC; Homeodomain-like superfamily protein, putative isoform 2
STRING	EOY32926	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	4e-95	HB-other family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG040945t2
Entrez Gene	18589998

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]