PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 435aa MW: 48312.6 Da PI: 7.6607

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG040564t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	368	413	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L +Av+YIk+Lq Thecc1EG040564t1 368 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 413 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.288	362	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-16	365	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.00E-12	366	417	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-15	367	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-9	368	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-14	368	418	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010119	Biological Process	regulation of stomatal movement
GO:0048573	Biological Process	photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MESDLQHHHH HLIDYHQPQH HQKQMNSGLM RYQSAPSSYF SSILDRDFCQ EFLNRPSSPE 60 TERIIERFLS SSGDGGGGNT VNISDQNLCA ITQNSPVRET VIKIEEPTQI MTPMNNQTGV 120 MQQQQQQQQQ PQQGNYSSAS QNFYQSQPQQ HLPNQQSGST MDYRIPNSMG MARPTQMKMG 180 GGNNSNLVRH SSSPAGLFSN LNIDNIAGYG VVRGMGDYGG VNNSNREASF PSASRPPPSG 240 LMSPIAEMGN KNVVPNSSEN AGFGENRHNN YSSGFPVTSW EDSMMISDNM PGVKRLREDD 300 RSLSGLDLDG AETQNTDAGN RPPPILAHHL SLPKSSAEMS AIDKFLQYQD SVPCKIRAKR 360 GCATHPRSIA ERVRRTKISE RMRKLQDLVP NMDKQTNTAD MLDLAVDYIK DLQNQVKTLS 420 DNRAKCSCSN KQQR*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MESDLQHHHH HLIDYHQPQH HQKQMNSGLM RYQSAPSSYF SSILDRDFCQ EFLNRPSSPE  60
TERIIERFLS SSGDGGGGNT VNISDQNLCA ITQNSPVRET VIKIEEPTQI MTPMNNQTGV  120
MQQQQQQQQQ PQQGNYSSAS QNFYQSQPQQ HLPNQQSGST MDYRIPNSMG MARPTQMKMG  180
GGNNSNLVRH SSSPAGLFSN LNIDNIAGYG VVRGMGDYGG VNNSNREASF PSASRPPPSG  240
LMSPIAEMGN KNVVPNSSEN AGFGENRHNN YSSGFPVTSW EDSMMISDNM PGVKRLREDD  300
RSLSGLDLDG AETQNTDAGN RPPPILAHHL SLPKSSAEMS AIDKFLQYQD SVPCKIRAKR  360
GCATHPRSIA ERVRRTKISE RMRKLQDLVP NMDKQTNTAD MLDLAVDYIK DLQNQVKTLS  420
DNRAKCSCSN KQQR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00646	PBM	Transfer from LOC_Os08g39630	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007014949.2	0.0	PREDICTED: transcription factor bHLH122 isoform X1
TrEMBL	A0A061GT25	0.0	A0A061GT25_THECC; DNA binding protein, putative isoform 1
STRING	EOY32568	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10547	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-70	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG040564t1
Entrez Gene	18589770

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]