PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GATA

Protein Properties

Length: 256aa MW: 28149.8 Da PI: 8.9985

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG040387t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.8	1.5e-18	201	237	1	35
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs nC+t +Tp+WR+gp g+ktLCnaCG++yrk+++ Thecc1EG040387t1 201 CSnyNCNTNDTPMWRKGPLGPKTLCNACGIKYRKEEE 237 55559*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	3.5E-12	197	248	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.38E-12	198	244	No hit	No description
CDD	cd00202	3.84E-9	200	232	No hit	No description
Pfam	PF00320	3.4E-16	201	237	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.0E-13	204	240	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.477	205	239	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDHSHQWFNQ ADRMNGYNNN NNVSNRVDLT LKLGLPDCDH QNPLVYQTGQ YVNPTSIAPN 60 HLANLSFAGP NTQGMNELEM VNQGAVAQGQ QSFNASQSAW PSDQLASNVH SMNHENTFNQ 120 ISGPSMGCPS NSTNTYSNFA PTHHHQLPPS SVPTNNYTLL DVPPRRTADQ RELGNSAASG 180 LGKRGQRRQR GGNYNDPNKR CSNYNCNTND TPMWRKGPLG PKTLCNACGI KYRKEEEKRK 240 AKEAGSKGQQ SNHNG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007014829.1	0.0	PREDICTED: GATA transcription factor 29
TrEMBL	A0A061GSP9	0.0	A0A061GSP9_THECC; Uncharacterized protein
STRING	EOY32448	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10652	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20750.1	3e-16	GATA transcription factor 29

Link Out ? help Back to Top
Phytozome	Thecc1EG040387t1
Entrez Gene	18589689

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]