PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 410aa MW: 45553.8 Da PI: 7.2327

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG039819t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.3	8.5e-29	288	342	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW p+LHe F++av++LGG+e AtPk+il+lm+v+gL + hvkSHLQkYRl Thecc1EG039819t1 288 KQRIRWMPKLHELFLNAVDKLGGPESATPKNILKLMNVQGLHICHVKSHLQKYRL 342 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-26	286	343	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.65E-14	286	343	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-23	288	343	IPR006447	Myb domain, plants
Pfam	PF14379	1.2E-6	380	402	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MTIFSLSGLV EVLFRASFLL LLLVLCHHLI ESEKHNYHEQ SVKGAMQTSR SGPSSVYKLL 60 SGEPIGLSSA NGNSSFTILQ PCYEQSEAPA SAPQASVSQP RDLIPNPVPH NSYIICHKST 120 RLCTGFHSST SESSNTEKHV GNSRCSSPLP MFDHLIPATN TPDSSLLFGE GKTTTCDKED 180 FEKFMVFPHV PAENSTVIPE HSAYPKGTLT LKEQLQLQYL TRELEIEMNG NGSENENPGL 240 AETHKVPRVA TVPVIQLEHN RNCLSSVVNL DGCIHSTHQH PEAVAANKQR IRWMPKLHEL 300 FLNAVDKLGG PESATPKNIL KLMNVQGLHI CHVKSHLQKY RLAKNVSELK HDKRSSRFEE 360 KETLTETHGD GNIAKERDTQ VLETLRMQVE VQKLLHEQLK VRSCAALCW*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MTIFSLSGLV EVLFRASFLL LLLVLCHHLI ESEKHNYHEQ SVKGAMQTSR SGPSSVYKLL  60
SGEPIGLSSA NGNSSFTILQ PCYEQSEAPA SAPQASVSQP RDLIPNPVPH NSYIICHKST  120
RLCTGFHSST SESSNTEKHV GNSRCSSPLP MFDHLIPATN TPDSSLLFGE GKTTTCDKED  180
FEKFMVFPHV PAENSTVIPE HSAYPKGTLT LKEQLQLQYL TRELEIEMNG NGSENENPGL  240
AETHKVPRVA TVPVIQLEHN RNCLSSVVNL DGCIHSTHQH PEAVAANKQR IRWMPKLHEL  300
FLNAVDKLGG PESATPKNIL KLMNVQGLHI CHVKSHLQKY RLAKNVSELK HDKRSSRFEE  360
KETLTETHGD GNIAKERDTQ VLETLRMQVE VQKLLHEQLK VRSCAALCW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	288	344	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	288	344	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	288	344	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	288	344	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	288	344	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	288	344	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	288	344	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	288	344	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017982335.1	0.0	PREDICTED: myb family transcription factor PHL6-like
TrEMBL	A0A061GYK5	0.0	A0A061GYK5_THECC; Myb-like HTH transcriptional regulator family protein
STRING	EOY32209	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21223	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-50	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG039819t1
Entrez Gene	18589518

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]