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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG038269t1 | ||||||||
Common Name | TCM_038269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | TALE | ||||||||
Protein Properties | Length: 354aa MW: 39501.7 Da PI: 6.6469 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.7 | 1.7e-07 | 250 | 282 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + Thecc1EG038269t1 250 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 282 59*****************************87 PP | |||||||
2 | ELK | 30.5 | 7.9e-11 | 203 | 224 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Thecc1EG038269t1 203 ELKHELKQGYKEKIVDVREEIL 224 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.8E-18 | 40 | 84 | IPR005540 | KNOX1 |
Pfam | PF03790 | 7.2E-17 | 43 | 82 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.9E-23 | 91 | 146 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.8E-16 | 96 | 145 | IPR005541 | KNOX2 |
Pfam | PF03789 | 4.6E-7 | 203 | 224 | IPR005539 | ELK domain |
SMART | SM01188 | 8.9E-4 | 203 | 224 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.83 | 203 | 223 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.823 | 223 | 286 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-10 | 225 | 290 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-15 | 225 | 289 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.31E-11 | 226 | 287 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-25 | 230 | 287 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.3E-18 | 243 | 282 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MAFDGFVSDH TKNMQTLALN GTAASASASA AADVDHWERA KHKAEIMGHP MYDQLLEAHV 60 ACLRVATPVD QLAKIDAQLA RSQQVLAKYS ATAATASDDE LDHFMTNYVL LLGFFKDQLQ 120 QHVRVHAMEA VMACWDLEQS LQSLTGVSPG EGTGATMSDD EDEVVDSDTS LFDGSLDGID 180 SMGFGPLIPS ETERSLMERV RQELKHELKQ GYKEKIVDVR EEILRKRRAG KLPGDTTSLL 240 KAWWQSHSKW PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWQSNPST SLKSKRKSFR 300 ACIIGDCNGK SGYKTTSVGC FILLTWLAII NNKFCGSALQ MGWHEHQSVL VNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-13 | 226 | 290 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017983426.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 | ||||
Swissprot | P48000 | 1e-159 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A061GQ90 | 0.0 | A0A061GQ90_THECC; Homeobox protein knotted-1-like 3 | ||||
STRING | EOY31317 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11060.1 | 1e-152 | KNOTTED1-like homeobox gene 4 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG038269t1 |
Entrez Gene | 18588912 |
Publications ? help Back to Top | |||
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