PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG038105t2 | ||||||||
Common Name | TCM_038105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | YABBY | ||||||||
Protein Properties | Length: 181aa MW: 20662.4 Da PI: 9.3271 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 169.9 | 1.7e-52 | 41 | 175 | 21 | 170 |
YABBY 21 ilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlk.snvekeesastsvsseklsenedeevprv 112 +++vsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ + ++++++ + +++++++ s+++ ++v++ Thecc1EG038105t2 41 LFLVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAPN--YATQDYRtELGSSSKCNKLSMRT------PANNVTEE 117 689****************************99999998884........1112..12222220122222222222222......22233333 PP YABBY 113 ppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 v+rPPekr rvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Thecc1EG038105t2 118 RVVNRPPEKRPRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 175 4589****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.2E-59 | 41 | 175 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.32E-8 | 119 | 168 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.4E-5 | 124 | 169 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
PCNFCNIVLA SKKSHNAKTR EREKERGKEG LRDNYSSFVM LFLVSVPCSS LFDIVTVRCG 60 HCTNLWSVNM AAAFQSLSWQ DVQAPNYATQ DYRTELGSSS KCNKLSMRTP ANNVTEERVV 120 NRPPEKRPRV PSAYNQFIKE EIQRIKANNP DISHREAFST AAKNWAHFPH IHFGLMLETN 180 N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017981942.1 | 1e-134 | PREDICTED: axial regulator YABBY 5 isoform X1 | ||||
Swissprot | Q8GW46 | 6e-74 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A061GVF3 | 1e-134 | A0A061GVF3_THECC; Plant-specific transcription factor YABBY family protein isoform 2 (Fragment) | ||||
STRING | EOY31098 | 1e-102 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-76 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG038105t2 |
Entrez Gene | 18588779 |
Publications ? help Back to Top | |||
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