PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037728t1
Common NameTCM_037728
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 300aa    MW: 32828.1 Da    PI: 5.7323
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037728t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.3e-161462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W+++Ed +l +  +++G+g +W + +r+ g++R++k+c++rw++yl
  Thecc1EG037728t1 14 RGPWSPDEDNILRNFLEKHGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62
                      89*********************************************97 PP
2Myb_DNA-binding38.13.6e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T eEd  +  + +  G++ W+ Ia++++ gRt++++k++w++
  Thecc1EG037728t1  69 GGFTDEEDNVICSLYNSIGSR-WSVIAARLQ-GRTDNDVKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.333966IPR017930Myb domain
SuperFamilySSF466892.9E-2611109IPR009057Homeodomain-like
SMARTSM007176.4E-121364IPR001005SANT/Myb domain
PfamPF002491.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-231569IPR009057Homeodomain-like
CDDcd001672.09E-91662No hitNo description
SMARTSM007171.8E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129415.38267117IPR017930Myb domain
PfamPF002497.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2370117IPR009057Homeodomain-like
CDDcd001678.11E-871111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPD EDNILRNFLE KHGTGGNWIA LPRKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTDEEDNVIC SLYNSIGSRW SVIAARLQGR TDNDVKNYWN TKLKKKLLAG  120
KVGLNKTSNN EITTDSSTSN LNSGQFSASI PSEAEARANG NSDYLNANGS TSSSYMTEMN  180
HRQNYDYPGL ILNQIDQFPL PGLMEVPDYS TSTANNNYNM SSSQEVSSLS NSSSFPMENM  240
SFATNWSGNG GAEDQGIVLD LDFEGPHYLF SGSTFQAKSS EEDAPCFGNF QSTASLANS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-23141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012950.20.0PREDICTED: transcription factor MYB36
TrEMBLA0A061GTW60.0A0A061GTW6_THECC; Transcription factor RAX1, putative
STRINGEOY305690.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.15e-68MYB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]