PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GATA

Protein Properties

Length: 303aa MW: 33637.9 Da PI: 9.2748

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037666t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.3	2.4e-19	171	204	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk + Thecc1EG037666t1 171 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 204 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	2.7E-19	165	216	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.52E-12	167	205	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.5E-15	169	204	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	12.374	169	201	IPR000679	Zinc finger, GATA-type
CDD	cd00202	2.05E-11	170	198	No hit	No description
PROSITE pattern	PS00344	0	171	196	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	4.7E-17	171	204	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MTSSNCYSSL YPFPIDLNED DQHQQHQLFS LKPQPPSLSS SSLTCPILFN PVVQEQAGGH 60 QREPHQHFQY QEDQAKIYVP QDEPLESDSG LNLSLRKKEE GNEHHQIEDS SAKWMSSKMR 120 MMRKMMSSDR ADLSNSSTPK LEEPKQQPSS SPDNSSNSSY NNNDNITIRV CADCNTTKTP 180 LWRSGPRGPK SLCNACGIRQ RKARRAMAAA AAANGAIVAA QTTPTMKSKV QDKSKRSSNS 240 GCVAQLKKKC KHSSQSQGRK KLCFEDLRII LSKNSAFHRV FPQDEKEAAI LLMALSYGLV 300 HG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527474	6e-35	HQ527474.1 Gossypium herbaceum clone NBRI_E_3369 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012845.2	0.0	PREDICTED: putative GATA transcription factor 22
TrEMBL	A0A061GTJ4	0.0	A0A061GTJ4_THECC; GATA type zinc finger transcription factor family protein, putative
STRING	EOY30464	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2109	26	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49300.1	4e-17	GATA transcription factor 16

Link Out ? help Back to Top
Phytozome	Thecc1EG037666t1
Entrez Gene	18588402

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]