PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037653t1
Common NameTCM_037653
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 655aa    MW: 72329.8 Da    PI: 7.3286
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037653t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.6e-063693831226
                       TS--TTTTT-SS-SS CS
           zf-CCCH  12 tGtCkyGdrCkFaHg 26 
                       +G C++G++C+F H+
  Thecc1EG037653t1 369 SGSCPRGEKCNFQHD 383
                       69************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073807.42E-3862280No hitNo description
PROSITE profilePS5010313.835357385IPR000571Zinc finger, CCCH-type
SMARTSM003560.045359384IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5361386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-6361385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.493389417IPR000571Zinc finger, CCCH-type
SMARTSM003560.12391416IPR000571Zinc finger, CCCH-type
PfamPF046773.6E-36433548IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541971.06E-5436513IPR011146HIT-like domain
PfamPF046762.3E-17568651IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MSMVHIFQTW ATGLGPFESV LIRQACPTSL PALPHHSSEH QSRFSLSTVS LSLSLMAPPR  60
ILLCGDVLGR PNQLFKRFNS VNKSAGPFDS LFCVGQFFPD ETDRLDELMD YIEGRAQIPL  120
PTYFIGDYGV GAAKVLSAAS KNSANQGFKM DGFKICDNLF WLKGSGKFTL HGLSVAYLSG  180
RQLSSGQQFG SYSEDDIDAL RAFAEEPGIV DFGVTNRATA SDIPAGMSNS SGSDSTVSQL  240
VAEIKPRYHI AGTKGAFYAR EPYSNVDAVH VTRFLGLASV GNKEKQKFLH ALSPTPSSAM  300
SAAEISAKPP NTTLSPYTLA DQVDRPKEAT MRAGDNAPDS QYWRYDVSNK RQKHGNGDGN  360
KVCFKFISSG SCPRGEKCNF QHDIDAREQF LRGVCLDFII KGKCEKGPDC NFKHSLQDEG  420
ESYSRKRPGS GNNSANRLKE CWFCLSSPNV EIHLVTSIGE NFYCALAKGP LVQDHVLLIP  480
VEHLPNTLCL SADSEIELGK FQNSLKMYYK NQGKEAVFFE WISKRGTHAN LQAVPVPSSK  540
AAALKDIFNL AAEKLGFEFV TKKFNNNSEG RKWLKTQFDK NFSCFYVELP EGSILSHLVE  600
ENEKFPAQFG REVLAGLLNM ADRADWRNCT LGKEEETKLA ENFKKLFDVF DPSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U6e-12435651669887CWF19-like protein 2
6id1_U6e-12435651669887CWF19-like protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012827.20.0PREDICTED: zinc finger CCCH domain-containing protein 64 isoform X1
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A061GKN30.0A0A061GKN3_THECC; CwfJ-like family protein / zinc finger (CCCH-type) family protein isoform 1
STRINGEOY304450.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1168822
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]