PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037650t1
Common NameTCM_037650
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 240aa    MW: 26569.2 Da    PI: 7.564
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037650t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260107.41.1e-33121121101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaC+++rr+C ++C lapyfpa++  +f+n+ k FG sn++k+++++++++r++a++s+++e++ar++ P +G++g+i++l++ le  ++e
  Thecc1EG037650t1  12 ACAACRHHRRRCHQSCELAPYFPASKYDEFKNALKHFGLSNIVKIMSTVRPDQRQAAAESILMEGNARLDHPAHGCLGIIRNLHSLLEIYESE 104
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la+++++l
  Thecc1EG037650t1 105 LAAVNQQL 112
                       ****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.11211112IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3112109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MNGEGRGGNP PACAACRHHR RRCHQSCELA PYFPASKYDE FKNALKHFGL SNIVKIMSTV  60
RPDQRQAAAE SILMEGNARL DHPAHGCLGI IRNLHSLLEI YESELAAVNQ QLAVFKASSS  120
STPQPSQPEI DPLVAKMFNE GDNSRWVNLE ADATINSVPS DSRGKQPVRP DEEARDDEAD  180
DIFMEKQKTP SFCRPNLLET KGAISVIRIS FFLPTAQLFF PAVHLPLTGR RKLDHKLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-191311212111LOB family transfactor Ramosa2.1
5ly0_B9e-191311212111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021275719.11e-125LOB domain-containing protein 22-like
TrEMBLA0A061GLM31e-178A0A061GLM3_THECC; LOB domain-containing protein 22, putative
STRINGEOY304411e-179(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64982645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-21LOB domain-containing protein 22
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]