PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037639t1
Common NameTCM_037639
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 963aa    MW: 105231 Da    PI: 7.7513
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037639t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.3e-07512531625
                       -SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                       C +++  G+C +Gd C F+H
  Thecc1EG037639t1 512 CINYMTKGFCGRGDDCLFSH 531
                       9******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.169452479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6453477IPR000571Zinc finger, CCCH-type
SMARTSM003560.031453478IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178481508IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4481507IPR000571Zinc finger, CCCH-type
SMARTSM003560.056509533IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-5510534IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.009511534IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4512532IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MFTPHRRSHL RSGTYHNLVR LISLCYGDSP LATAPPIIPV HRTPDNGSKQ GEPGGNDIGE  60
PGESIVQNSS EPANLPAQGG TVVDADFKGA VFKDSGFSDT QMVIDEIEQI MQIEESQNFV  120
NGNDLKVCSS TEGTGFQDGE IGPEQSLMNE LENIMKGNED YDNRNNCLAT SLGQNLGDNC  180
LGVSMNNQEE RIELPLVVAE ESGTAVQPQV FMEGDNQKII EAFDFSSDKS LIVEVSKSSE  240
KAEDQSSLLK SNSMHEKIGI QQKEMELEKF VSSNDRMPSP GQMVENGELE EGEIFGDIQL  300
VNESVDILLE DAVVSEKKGE EKQVDPFDDK GLHCNEESTA NNKDSEITSF NMNIAQIANR  360
VSDVELEGSE RDHMVSELGR MRRKKGTKQS GDENHIIKSK KKKDDGVCNK KNQGSNLAEK  420
KEKKKRNKRK KRAEKNQQLG VKRLKLQTVL KPKSVTYCRH YLKGRCYEGE KCKYSHDTVP  480
LTKSQPCSHF ARQSCMKGDE CPFDHQLSKY HCINYMTKGF CGRGDDCLFS HKMSPEGGVA  540
SLSSARELQL KSSLHGDSEM RLSISKNVDA SSCSIRAFSQ KSKEQIVAGT PTKTPDLACK  600
GVNSLFVSKS SMAESSKLNR GSSSQKMKES GEVGIQSNLS TSGVNSPCAS KPSLKMNKSG  660
RLGIQANQSE SGTIQNVNDS STRKTEVVPR GINFLSFGKS SLEDTTSKVS LALNRGVGCK  720
QHPSENEGDR GKLSNQTTQS TSSTDQKKTH PAVVPLGINF LSLGKSGNSR SNEASMPSSS  780
DIVNNGSLQK SNYASDKRRN SSEISYRSPV SPQTSGQSSE WLSHKNTPNT AQKAIISTLA  840
FAKKFDDVNS QSFHESQHLS DKQYSSNPIP WKMAAYPLAL GQSSEKISHK NTPNSVQKAL  900
MSTLAFAAKF ESGMKKNQSA VSTGVKSETR DSRNDEGSKS DLAETSKLLD ILSSVGRKIK  960
QM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382402RKKGTKQSGDENHIIKSKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012797.20.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X1
TrEMBLA0A061GLJ50.0A0A061GLJ5_THECC; Uncharacterized protein isoform 1
STRINGEOY304170.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1724178
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]