PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG037486t1 | ||||||||
Common Name | TCM_037486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 21751.2 Da PI: 4.3514 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 17 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kGVr +k +g+Wv+eIr p++ r r++lg+++tae+Aa+a +aa +l+g Thecc1EG037486t1 17 RFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 66 69****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-11 | 17 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.865 | 17 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.52E-29 | 17 | 76 | No hit | No description |
SMART | SM00380 | 9.4E-33 | 17 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-29 | 18 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-20 | 18 | 75 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MVKNISDRPA AERSDLRFKG VRKRKWGKWV SEIRLPNSRE RIWLGSYDTA EKAARAFDAA 60 LFCLRGGSAK FNFPDNPPDI DGGRSLTPPE IQAAAARFAQ MEPPRTQAEQ STSGFQTESS 120 SPSISEGTVQ LDSDLPMDGS FMDLLTMGSD NYASDYGIFP GFDDLSSYFL GSSVPNIGCE 180 EDNIEGILVP ESFLWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-15 | 17 | 74 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 24 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616526 | 6e-68 | JX616526.1 Gossypium hirsutum clone NBRI_GE61260 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007012584.2 | 1e-139 | PREDICTED: ethylene-responsive transcription factor ERF017 | ||||
Swissprot | Q84QC2 | 3e-56 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A061GLE5 | 1e-142 | A0A061GLE5_THECC; AP2/ERF domain-containing transcription factor | ||||
STRING | EOY30203 | 1e-143 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1614 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-58 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG037486t1 |
Entrez Gene | 18588240 |
Publications ? help Back to Top | |||
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