PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 542aa MW: 57736.7 Da PI: 5.327

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037455t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	303	348	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + +eY+k Lq Thecc1EG037455t1 303 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIEYVKFLQ 348 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.91E-12	296	352	No hit	No description
SuperFamily	SSF47459	9.16E-17	296	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.161	298	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	300	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-9	303	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-13	304	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MDDYLDQYFS SSSWSDVNVN ERSSWVHCEP DQPNALLPSS IGVYQDDKTS SPVRMISSNH 60 TMGCLAAQDR IPSGESGCGV ELGLLSGEGE PQMDGQNCSS NSTKEMLNGS LAFANVELQF 120 NTAVHSSGSL SLGSPKDLSV VGDLTPSLSF NERGHVICNE GESSEFRRSL TGLETLSPIP 180 KLWHPQPYDG VSSLPTLMGQ TRMEISCLQG ENGTVNNDGN INRFVEIDKI LQPENLSASI 240 SAKGKQDMKN SLYSSFPAEH QITKTMIGLP SLLQSASPTP NNGCNGIGKP RVRARRGQAT 300 DPHSIAERLR REKIAERMKN LQELVPNSNK TDKASMLDEI IEYVKFLQLQ VKVLSMSRLG 360 AAGAVVPLIT DCQAEGSNGL SLSPLAGQGV DFSASPDQVV FEQEVVKLME SNVTMAMQYL 420 QSKGLCLMPI ALANAISNGK ASSSSSSSSG PASEERKKFG FTKGLVNNDI VHNTCTSNGL 480 VQNSNCSSSS SSSSGSLPGV GIHYLSSDGH FMIGKLSGGL LANGCNGSFK QEEMNTLCTA 540 K*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MDDYLDQYFS SSSWSDVNVN ERSSWVHCEP DQPNALLPSS IGVYQDDKTS SPVRMISSNH  60
TMGCLAAQDR IPSGESGCGV ELGLLSGEGE PQMDGQNCSS NSTKEMLNGS LAFANVELQF  120
NTAVHSSGSL SLGSPKDLSV VGDLTPSLSF NERGHVICNE GESSEFRRSL TGLETLSPIP  180
KLWHPQPYDG VSSLPTLMGQ TRMEISCLQG ENGTVNNDGN INRFVEIDKI LQPENLSASI  240
SAKGKQDMKN SLYSSFPAEH QITKTMIGLP SLLQSASPTP NNGCNGIGKP RVRARRGQAT  300
DPHSIAERLR REKIAERMKN LQELVPNSNK TDKASMLDEI IEYVKFLQLQ VKVLSMSRLG  360
AAGAVVPLIT DCQAEGSNGL SLSPLAGQGV DFSASPDQVV FEQEVVKLME SNVTMAMQYL  420
QSKGLCLMPI ALANAISNGK ASSSSSSSSG PASEERKKFG FTKGLVNNDI VHNTCTSNGL  480
VQNSNCSSSS SSSSGSLPGV GIHYLSSDGH FMIGKLSGGL LANGCNGSFK QEEMNTLCTA  540
K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012525.2	0.0	PREDICTED: uncharacterized protein LOC18588211
TrEMBL	A0A061GSQ0	0.0	A0A061GSQ0_THECC; Transcription factor bHLH69, putative isoform 1
STRING	EOY30144	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16266	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	6e-60	LJRHL1-like 3

Link Out ? help Back to Top
Phytozome	Thecc1EG037455t1
Entrez Gene	18588211

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]