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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG037394t1 | ||||||||
Common Name | TCM_037394 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21551 Da PI: 10.2735 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.5 | 1.3e-16 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ rq +skR++g+ KKA+EL +LCd++ a+++fs+t+k Thecc1EG037394t1 10 RLESAKARQAKYSKRKAGLVKKAKELAILCDVDLALLLFSPTDK 53 6789999**********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.6E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.287 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.80E-20 | 2 | 57 | No hit | No description |
SuperFamily | SSF55455 | 4.84E-22 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-18 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MGRRKLKIQR LESAKARQAK YSKRKAGLVK KAKELAILCD VDLALLLFSP TDKPTLFVGQ 60 DKDLSTVVER LSKLPLEERE ERRDYTMKLL NKFYANSDSE ALPRNVSEDR SNVLKLHEDQ 120 LKELKEKLAE KSKILRDWKY PQNVEDLSQI KIMEEHLIAY LNGVRNRKSQ LAMEQQKGQE 180 GLKGAK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007012432.1 | 1e-131 | PREDICTED: agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A061GKI9 | 1e-130 | A0A061GKI9_THECC; AGAMOUS-like 33 | ||||
STRING | EOY30051 | 1e-131 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7330 | 18 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26320.1 | 2e-29 | AGAMOUS-like 33 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG037394t1 |
Entrez Gene | 18588159 |
Publications ? help Back to Top | |||
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