PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037300t1
Common NameTCM_037300
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 553aa    MW: 59073.1 Da    PI: 9.293
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037300t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-0579101123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C++C+k F r  nL+ H r H
  Thecc1EG037300t1  79 FICEICNKGFQRDQNLQLHKRGH 101
                       89******************988 PP
2zf-C2H212.30.0005156178123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k++  +s+ k H + +
  Thecc1EG037300t1 156 WKCEKCSKRYAVQSDWKAHSKIC 178
                       58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.5E-678101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.9E-778101No hitNo description
PfamPF121713.7E-579101IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.80379101IPR007087Zinc finger, C2H2
SMARTSM003550.02279101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355200121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.9E-7151176No hitNo description
SMARTSM00355130156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MMKSKVVEEN MSNLTSTSGE VSASSGTRIE TGTLYPQQSF ASTNQAPPSK KKRSLPGNPD  60
PDAEVIALSP KTLMATNRFI CEICNKGFQR DQNLQLHKRG HNLPWKLKQR TNKELIRKKV  120
YVCPEPTCVH HDPARALGDL TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAITAANP LLPSNQPGSS VSHMTNLQPQ  240
LHSDALHALS VKREQDHLFI AGVPADSIPP WLTCPSGVGA GPGPPSTNLS SSSSPLFLDH  300
PLAQNENPSQ NPSSTLPPFQ APTASLHMSA TALLQKAAQM GVTMSKPLQS AAAMQRPHQQ  360
THMSGTAGFT GSTSASLATS TAGSGLGLSA REELGSGFPH ELAFFGNKAA ATSGFMEQAS  420
ATNSTAGAGA GAAAPSLLHD MMSSLSSTSG FDGSSSFEQS LNGILDTKLG NSTFQQATLS  480
KRTEYQLSRS DHEGRGSSAS SNIGGNDGLT RDFLGLKAFP YRDFPNLAGL NRINSSSAYG  540
QQNQHSQTPW QG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35152219370Zinc finger protein JACKDAW
5b3h_F2e-35152219370Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105118KLKQRTNKELIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012298.20.0PREDICTED: protein indeterminate-domain 7
SwissprotQ8H1F51e-124IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A061GL790.0A0A061GL79_THECC; Indeterminate(ID)-domain 7, putative
STRINGEOY299170.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-123indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]