![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG037274t1 | ||||||||
Common Name | TCM_037274 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 588aa MW: 65049.2 Da PI: 6.0671 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.9 | 1.7e-08 | 506 | 544 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + Thecc1EG037274t1 506 MFQNflHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVR 544 5887779******************************88 PP | |||||||
2 | BELL | 82.6 | 5e-27 | 381 | 448 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +++kk++Ll+ll+ Vd+rY+q+ ++++tvis+F+a+++l++ ++++++Al++iS+ +++L+++i++qi Thecc1EG037274t1 381 TVEAKKTQLLTLLQVVDDRYSQCLDEIHTVISAFHAATELDP-QVHARFALQTISFLYKNLRERISNQI 448 6799**************************************.*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.5E-24 | 301 | 446 | IPR006563 | POX domain |
Pfam | PF07526 | 4.0E-26 | 307 | 445 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.062 | 485 | 548 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-6 | 488 | 552 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.03E-11 | 488 | 549 | No hit | No description |
SuperFamily | SSF46689 | 2.22E-15 | 489 | 557 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-26 | 491 | 554 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.4E-14 | 505 | 544 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 588 aa Download sequence Send to blast |
MMENDMFSVS RAMGNLNPVV VDGIPSRTAP NSIVESHSFS IINQNQTLAE FPVLPSAQGE 60 IISDLCADLH ITNRARFFDS NALVTSLGRT VVSDVSLGSS PSEDNMEFQE QFMGRTAISS 120 IPPAKCVPQE NLNELAIIAP SIYPLDVRTY SSTSCSDGIN SSLVTSVNCV FNEALGNLNN 180 KWDFEKFPSP LELVGKPPLR TACQPYTSIG CPDPNGWISS NGANMSIDYP CGSSKHSNEL 240 SLSLATSLPA VISGNNIPDQ SSEINCSGAN HFCLNTTRLG SEQPSCNAKE LSLSFGSYGP 300 VQESHLISGS RYLHAVQEIL AQIASYSLEN LDQMSVGAGA TIPFSSSFLA GRGMALMDPN 360 EHPDIDGNSE VRLEPEVRKR TVEAKKTQLL TLLQVVDDRY SQCLDEIHTV ISAFHAATEL 420 DPQVHARFAL QTISFLYKNL RERISNQILA MGANFDSGYT GGREKSFQNS FIQEQWALQQ 480 LKKKDQLWRP QRGLPEKSVS VLRAWMFQNF LHPYPKDAEK HLLAIKSGLT RSQVSNWFIN 540 ARVRLWKPMI EEMYSEMNRR KARQNEEGTN SNHRSQISIN NQRFNIN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-14 | 494 | 552 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-14 | 494 | 552 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-14 | 494 | 552 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-14 | 494 | 552 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-14 | 494 | 551 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-14 | 494 | 551 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007012261.2 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_017983950.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Refseq | XP_017983952.1 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Swissprot | P48731 | 1e-116 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A061GJ28 | 0.0 | A0A061GJ28_THECC; Homeobox gene 1, putative | ||||
STRING | EOY29880 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8228 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-118 | homeobox gene 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG037274t1 |
Entrez Gene | 18588048 |
Publications ? help Back to Top | |||
---|---|---|---|
|