PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037274t1
Common NameTCM_037274
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TALE
Protein Properties Length: 588aa    MW: 65049.2 Da    PI: 6.0671
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037274t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.7e-085065441854
                       HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Thecc1EG037274t1 506 MFQNflHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVR 544
                       5887779******************************88 PP
2BELL82.65e-27381448472
              BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +++kk++Ll+ll+ Vd+rY+q+ ++++tvis+F+a+++l++ ++++++Al++iS+ +++L+++i++qi
  Thecc1EG037274t1 381 TVEAKKTQLLTLLQVVDDRYSQCLDEIHTVISAFHAATELDP-QVHARFALQTISFLYKNLRERISNQI 448
                       6799**************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.5E-24301446IPR006563POX domain
PfamPF075264.0E-26307445IPR006563POX domain
PROSITE profilePS5007111.062485548IPR001356Homeobox domain
SMARTSM003897.8E-6488552IPR001356Homeobox domain
CDDcd000862.03E-11488549No hitNo description
SuperFamilySSF466892.22E-15489557IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-26491554IPR009057Homeodomain-like
PfamPF059201.4E-14505544IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MMENDMFSVS RAMGNLNPVV VDGIPSRTAP NSIVESHSFS IINQNQTLAE FPVLPSAQGE  60
IISDLCADLH ITNRARFFDS NALVTSLGRT VVSDVSLGSS PSEDNMEFQE QFMGRTAISS  120
IPPAKCVPQE NLNELAIIAP SIYPLDVRTY SSTSCSDGIN SSLVTSVNCV FNEALGNLNN  180
KWDFEKFPSP LELVGKPPLR TACQPYTSIG CPDPNGWISS NGANMSIDYP CGSSKHSNEL  240
SLSLATSLPA VISGNNIPDQ SSEINCSGAN HFCLNTTRLG SEQPSCNAKE LSLSFGSYGP  300
VQESHLISGS RYLHAVQEIL AQIASYSLEN LDQMSVGAGA TIPFSSSFLA GRGMALMDPN  360
EHPDIDGNSE VRLEPEVRKR TVEAKKTQLL TLLQVVDDRY SQCLDEIHTV ISAFHAATEL  420
DPQVHARFAL QTISFLYKNL RERISNQILA MGANFDSGYT GGREKSFQNS FIQEQWALQQ  480
LKKKDQLWRP QRGLPEKSVS VLRAWMFQNF LHPYPKDAEK HLLAIKSGLT RSQVSNWFIN  540
ARVRLWKPMI EEMYSEMNRR KARQNEEGTN SNHRSQISIN NQRFNIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14494552563Homeobox protein Meis2
3k2a_B2e-14494552563Homeobox protein Meis2
4xrm_A2e-14494552563Homeobox protein Meis2
4xrm_B2e-14494552563Homeobox protein Meis2
4xrs_A2e-14494551158Homeobox protein Meis1
4xrs_B2e-14494551158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012261.20.0PREDICTED: homeobox protein ATH1
RefseqXP_017983950.10.0PREDICTED: homeobox protein ATH1
RefseqXP_017983952.10.0PREDICTED: homeobox protein ATH1
SwissprotP487311e-116ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A061GJ280.0A0A061GJ28_THECC; Homeobox gene 1, putative
STRINGEOY298800.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-118homeobox gene 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]