PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GATA

Protein Properties

Length: 364aa MW: 39922.3 Da PI: 6.3189

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037205t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.1	1e-17	252	286	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Thecc1EG037205t1 252 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 286 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	2.3E-77	13	342	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	12.519	246	282	IPR000679	Zinc finger, GATA-type
SMART	SM00401	4.2E-17	246	296	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.6E-14	247	283	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	2.23E-15	248	310	No hit	No description
CDD	cd00202	2.58E-14	251	298	No hit	No description
Pfam	PF00320	1.3E-15	252	286	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	252	277	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MEAPEFYQGS SYCSQFAPEK PAAGDHFIVE DLLDFSNEDA VITDGTFDSS VAGGHSTDSS 60 TVTAVDSCNS SSLSGCEPNF EGDMGCRGFT DGQFAGDLCV PYDDLAELEW LSNFVEESFS 120 SEDLQKLQLI SGMKTRPDES SQSGGFQPVI TNQMHHVIEN GDTEHGNNNN NPSFHPDMSV 180 PAKARSKRSR AAPLNWASRL LVLSPTTSSS EPDIVVPVQP PPPNHPGKKP VKTKKKDGGE 240 GGGLANSDGR KCLHCATDKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL 300 TKHSNSHRKV LELRRQKEML RAQHQHQQQF MQHHHHQNMV FDVPNGDDYL IHQHVGPDFR 360 QLI*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MEAPEFYQGS SYCSQFAPEK PAAGDHFIVE DLLDFSNEDA VITDGTFDSS VAGGHSTDSS  60
TVTAVDSCNS SSLSGCEPNF EGDMGCRGFT DGQFAGDLCV PYDDLAELEW LSNFVEESFS  120
SEDLQKLQLI SGMKTRPDES SQSGGFQPVI TNQMHHVIEN GDTEHGNNNN NPSFHPDMSV  180
PAKARSKRSR AAPLNWASRL LVLSPTTSSS EPDIVVPVQP PPPNHPGKKP VKTKKKDGGE  240
GGGLANSDGR KCLHCATDKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL  300
TKHSNSHRKV LELRRQKEML RAQHQHQQQF MQHHHHQNMV FDVPNGDDYL IHQHVGPDFR  360
QLI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00530	DAP	Transfer from AT5G25830	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012149.2	0.0	PREDICTED: GATA transcription factor 12
Swissprot	P69781	4e-94	GAT12_ARATH; GATA transcription factor 12
TrEMBL	A0A061GK48	0.0	A0A061GK48_THECC; GATA transcription factor
STRING	EOY29768	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6625	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	1e-79	GATA transcription factor 12

Link Out ? help Back to Top
Phytozome	Thecc1EG037205t1
Entrez Gene	18587985

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]